Protein Info for MPMX19_05971 in Azospirillum sp. SherDot2

Annotation: Diacetylchitobiose uptake system permease protein NgcG

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 289 transmembrane" amino acids 29 to 47 (19 residues), see Phobius details amino acids 90 to 111 (22 residues), see Phobius details amino acids 123 to 143 (21 residues), see Phobius details amino acids 154 to 177 (24 residues), see Phobius details amino acids 198 to 224 (27 residues), see Phobius details amino acids 255 to 276 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 104 to 280 (177 residues), 31.9 bits, see alignment E=5.6e-12

Best Hits

KEGG orthology group: K02026, multiple sugar transport system permease protein (inferred from 97% identity to azl:AZL_e03040)

Predicted SEED Role

"Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3)" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization (TC 3.A.1.1.3)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (289 amino acids)

>MPMX19_05971 Diacetylchitobiose uptake system permease protein NgcG (Azospirillum sp. SherDot2)
MSKAAVLAPGSLAAPANIRRSSARVSNRTIVLVCYIIFLMLPIYWMVNMSFKTNEEILSG
LTLYPHNPTLRNYAIIFTDPSWYSGYINSIYYVTLNTIISLTVALPAAYAFSRYRFIGDK
HVFFWLLTNKMAPPAVFLLPFFQLYQTVGLFDTHIAVALAHCLFNVPLAVWILEGFMSGV
PREIDEMAYIDGYSFPRFFGTVFLPMIRAGVGVTAFFCFMFSWVELLLARTLTSVDAKPI
AATMTRTVSASGMDWGLLAAAGVLTILPGALVIWFVRNYIAKGFALGRV