Protein Info for MPMX19_05970 in Azospirillum sp. SherDot2

Annotation: L-arabinose transport system permease protein AraP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 291 transmembrane" amino acids 9 to 32 (24 residues), see Phobius details amino acids 70 to 90 (21 residues), see Phobius details amino acids 101 to 124 (24 residues), see Phobius details amino acids 154 to 176 (23 residues), see Phobius details amino acids 208 to 226 (19 residues), see Phobius details amino acids 260 to 282 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 81 to 280 (200 residues), 65.7 bits, see alignment E=2.3e-22

Best Hits

KEGG orthology group: K02025, multiple sugar transport system permease protein (inferred from 96% identity to azl:AZL_e03050)

Predicted SEED Role

"Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3)" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization (TC 3.A.1.1.3)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (291 amino acids)

>MPMX19_05970 L-arabinose transport system permease protein AraP (Azospirillum sp. SherDot2)
MDKVQDNRAWFLIIPVFLIVAFSAVVPLMTVVNYSVQEIFGPGQTFFVGTEWFEAVLKDE
RLHDALVRQIVYSLAVLAIEIPLGILIALGMPGGRSAKTSLTLVLLALPLLIPFNVVGTI
WQIFGRGDIGLLGATFRAIGIDYNYTNNSAHAWVTVLVMDVWHWTSLVALLCYAGLQSIP
PAFYQAAKIDGASKWAVFRYIQLPKMRGVLIIAVLLRFMDSFMIYTEPFVLTGGGPGNST
TFLSQYLTQMAVGQFDIGKAAAFSIVYFLIVLLFSFIFYTIITRTGEGEKK