Protein Info for MPMX19_05923 in Azospirillum sp. SherDot2

Annotation: Vitamin B12 import ATP-binding protein BtuD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 554 PF00005: ABC_tran" amino acids 19 to 160 (142 residues), 113.8 bits, see alignment E=3.5e-36 amino acids 314 to 454 (141 residues), 104.4 bits, see alignment E=2.7e-33 TIGR01184: nitrate ABC transporter, ATP-binding proteins C and D" amino acids 314 to 542 (229 residues), 322.3 bits, see alignment E=3.4e-100

Best Hits

KEGG orthology group: None (inferred from 94% identity to azl:AZL_e03530)

Predicted SEED Role

"Nitrate ABC transporter, ATP-binding protein" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (554 amino acids)

>MPMX19_05923 Vitamin B12 import ATP-binding protein BtuD (Azospirillum sp. SherDot2)
MAILDLKGVSKSYGGNTVLRDIDLSIEEGEFVAIVGFSGSGKSTLINLIAGLAMPDTGEV
LYRGKPVTGPGPERGLVFQSYSLMPWLSVKENVALAVDAVHKAKGGAERGVLTRRAVETV
GLGHATDRRPKELSGGMRQRVGFARALAMSPEMLLLDEPLSALDALTRAKLQDEIEAIWR
KDRKTVILITNDVDEAILLADRIVPLTPGPNATLGPAFTVDLPRPRDRTAVNHDEDFKRL
RAEVTAYLMEVGVARGTGGDDGLTLPDVKPITASPPPKAYIEAMGGRGMEDRYLEFTRLT
KTFATPKGPLTVVDGFDLKMRKGEFVSLIGHSGCGKSTVLSMVAGLADITSGGIILDGKE
VDGAGPDRAVVFQAPSLFPWLTAYENVMLGVDRVFPHASKGERADISRYYLARVGLGDSM
NKKASELSNGMKQRVGIARAFALSPKLLLLDEPFGMLDSLTRWELQEVLMEVWARTKVTA
VCVTHDVDEALLLADRVVMMTNGPNAKIGHVLTVDIPHPRTRQALLEHPRYYDYREELLN
FLEGGHAGAPKKAA