Protein Info for MPMX19_05915 in Azospirillum sp. SherDot2

Annotation: Flagellar M-ring protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 572 transmembrane" amino acids 16 to 37 (22 residues), see Phobius details amino acids 437 to 455 (19 residues), see Phobius details TIGR00206: flagellar M-ring protein FliF" amino acids 26 to 462 (437 residues), 270.8 bits, see alignment E=1.5e-84 PF01514: YscJ_FliF" amino acids 38 to 212 (175 residues), 202.6 bits, see alignment E=4.8e-64 PF08345: YscJ_FliF_C" amino acids 245 to 410 (166 residues), 139.3 bits, see alignment E=1.3e-44

Best Hits

KEGG orthology group: K02409, flagellar M-ring protein FliF (inferred from 94% identity to azl:AZL_e00930)

Predicted SEED Role

"Flagellar M-ring protein FliF" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (572 amino acids)

>MPMX19_05915 Flagellar M-ring protein (Azospirillum sp. SherDot2)
MDSLIDTLRSLGRGRLLVLAGTGLGIVLAVAGMAVLLSQPHMTALYSGLEPAEAGRIAKA
VQDMGVPVNAGFDGTTISVPQADVSRVRMALAEKGLPAHGGVGYELFDTDKPLGITSFMQ
RINRLRAMEGELGRTIETLSGVEAARVHIVLPEREEFSRSAPKPTASVVVRMRGRGSMDR
KQALSIRHLVSAAVPNLKPSAVTVMDSSGELLLTEDDGPGLASARTDGLRVAAETRVARA
VEQMLTARLGAGNVRVQVAAEVETKREVVRSQTFDPNSQVIRSTQSVQEQERSQDSNGEP
PVTAEQNLPQRDVRAQSQGPQSSNDTKRQEETVNYEISNVSRETVIEPGDVRRLSVAVLV
NGTWKTAADGTRQYEPRTAEELQRLGELVRSAMGFSEARGDRVTVDNLEFVDLAPDLAPR
PLGDEIAETLTRNVMTLIQWVILLVLSALVILVGLRPLIRRVFPAPEPVVAEAAAPALAA
PAGGAMPQLTGPAVTAAAGAALGDGGEADAALAAAPMAPQLGIEETMDQLIELRTVEGRV
RASSIRRLGELVDQYPDEAIDILRSWLYEEVA