Protein Info for MPMX19_05913 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 390 TIGR01397: flagellar motor switch protein FliM" amino acids 67 to 375 (309 residues), 247.9 bits, see alignment E=7e-78 PF02154: FliM" amino acids 98 to 285 (188 residues), 176.4 bits, see alignment E=6.4e-56 PF01052: FliMN_C" amino acids 307 to 374 (68 residues), 55.6 bits, see alignment E=4.1e-19

Best Hits

Swiss-Prot: 49% identical to FLIM_CAUVN: Flagellar motor switch protein FliM (fliM) from Caulobacter vibrioides (strain NA1000 / CB15N)

KEGG orthology group: None (inferred from 92% identity to azl:AZL_e00910)

Predicted SEED Role

"Flagellar motor switch protein FliM" in subsystem Bacterial Chemotaxis or Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (390 amino acids)

>MPMX19_05913 hypothetical protein (Azospirillum sp. SherDot2)
MTTDTPAPPSTTMPAPQSLPAEDADWSDAAWELAAAQQTAAPAPPPAEEAAAMAEAMREA
LAGETKTLSQEEIDRLLNFGAPEGGGPEMSAIQRLVSSTTVNKDRLPMLDVVFDRMVRML
NTSLRQFASTNVEASLSKIEWLRYTDFQDAIELPALIGVARAEPWDNQMLVTIDSALIYC
MMDVLLGGRRSRPGRIDGRAYTSIERKMTERMMKVVLQDLGQSFDPLAQVDFVFDRLEVN
PQFATITRATNAIIRVRIAVEVERRTGHIDIVIPYATLEPVRGKLVQMFMGEKFGHDSVW
ESHLKNELMRSKLELVAVLAETKVPLGEVLAWQKGQSLKLRISPDQTVLVFSKTIPLFAG
HMGQRNDNIAVKIDTDLDTKQELIDGLLSH