Protein Info for MPMX19_05885 in Azospirillum sp. SherDot2

Annotation: Sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 916 PF08448: PAS_4" amino acids 78 to 184 (107 residues), 28.6 bits, see alignment E=4.4e-10 amino acids 389 to 504 (116 residues), 42.4 bits, see alignment E=2.2e-14 PF01590: GAF" amino acids 209 to 347 (139 residues), 39.9 bits, see alignment E=1.8e-13 PF13185: GAF_2" amino acids 211 to 349 (139 residues), 30.9 bits, see alignment E=9.1e-11 PF02518: HATPase_c" amino acids 649 to 764 (116 residues), 68.7 bits, see alignment E=1.8e-22 PF00072: Response_reg" amino acids 792 to 897 (106 residues), 60.9 bits, see alignment E=3.9e-20

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (916 amino acids)

>MPMX19_05885 Sensor histidine kinase RcsC (Azospirillum sp. SherDot2)
MMADPVWQDAARLRQSAGPVRTPDGRERGSRTDPNVFTGGGEMGRRMREMDWSATPLGPA
EDWPQSLRTIVNLMLTSSFPMFAVWGPELTFLYNDSYRPILGDKPEALGRPFAAVWADIW
EDLVPLVARALAGEATYHEDRLLFMERHAYREETYFTFSYSPVRDEADRVAGMFCACTEN
TARVLAERRLTFQLDLAEKLRGLNDPVGITAAAAEAIGRHLRVARAGYGRIDPTGGMISV
DRDWSDSGVESLAGQSRPLDSFGPALIAELRAGYTLRVDDVATDPRTSGSGPAAAFAGIG
ARALLVVPLLKAGQLTAILYLHEGQARHWTETDAALAEDVAERTWAAVERALAETALRAA
NTALIRERAAVEAANARLAAEGERLRTLFRQAPGFMCVLRGPDHVFELANDTYMQLVGRR
DLMDRPARDALPEVEGQGFFELLDRVYASGETFVGHSIPISFQRRPDGPLEERFLTFVYQ
PIKDEDGRVTGLFVEGSDVTEAKRAEEELQQLNATLEARVAEEVAERERVQIALLQTQKT
EALGQMTGGVAHDFNNLLQALSGCLHMIEKRAEGTRIQPLVDAGRQAVDRGAKLVQQLMA
FARRQALRPETVDLRDRVLGMSELLNRALRADIRLEVDFATGLWPVEVDATQLELALLNL
VVNARDAMPDGGMLSIQAANVTLTHGDPQAPNGLSGEFVRLTVSDTGTGMPADVQARAFD
PFFTTKEIGKGSGLGLSQVYGFARHSGGTVWIESEEGRGTVIGLLIRRSGTAPATAAKPV
AEAGASRVGGHVLVVEDDPIVALTVATALEDAGFTVTRAATADEALPLLEAGGFDLLFSD
VVMPGTMSGVDLARSAQRLRPDLPVVLATGYSEEVARATGVMVLPKPYRIDHLVEVLDTL
LTEAKRVGMEIPSPPR