Protein Info for MPMX19_05849 in Azospirillum sp. SherDot2

Annotation: TorCAD operon transcriptional regulatory protein TorR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 235 PF00072: Response_reg" amino acids 5 to 114 (110 residues), 91.9 bits, see alignment E=2.9e-30 PF00486: Trans_reg_C" amino acids 151 to 227 (77 residues), 75.7 bits, see alignment E=2.4e-25

Best Hits

Swiss-Prot: 40% identical to ARCA_SHIFL: Aerobic respiration control protein ArcA (arcA) from Shigella flexneri

KEGG orthology group: None (inferred from 97% identity to azl:AZL_d00610)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (235 amino acids)

>MPMX19_05849 TorCAD operon transcriptional regulatory protein TorR (Azospirillum sp. SherDot2)
MAATIAITDDDAVTRETLKSYLTDEGFDVLLARSAEELKDLLAAAAVDVVLLDIRLPRQD
GLTLTRELRAVSEIGIILVSSRAEKLDRIIGLEMGADDYIAKPFEPREILARVRNLLRRL
KAPGDQRDDRKRCFSGWTLWLDRMRLTDPQGNPVRLTGAEFELLSTFVCNPGRVMNRDYL
LTATTRRKTDATDRTIDSLVRRLRRLIETDPADPRLIVTVHGTGYLFAGDVTQDG