Protein Info for MPMX19_05847 in Azospirillum sp. SherDot2

Annotation: Inner membrane amino-acid ABC transporter permease protein YhdY

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 391 transmembrane" amino acids 60 to 84 (25 residues), see Phobius details amino acids 125 to 146 (22 residues), see Phobius details amino acids 152 to 175 (24 residues), see Phobius details amino acids 185 to 208 (24 residues), see Phobius details amino acids 228 to 247 (20 residues), see Phobius details amino acids 259 to 276 (18 residues), see Phobius details amino acids 306 to 314 (9 residues), see Phobius details amino acids 329 to 347 (19 residues), see Phobius details amino acids 357 to 377 (21 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 182 to 277 (96 residues), 63.1 bits, see alignment E=1.4e-21 PF00528: BPD_transp_1" amino acids 199 to 383 (185 residues), 77 bits, see alignment E=8.3e-26

Best Hits

KEGG orthology group: K09971, general L-amino acid transport system permease protein (inferred from 93% identity to azl:AZL_d00630)

Predicted SEED Role

"Glutamate Aspartate transport system permease protein GltK (TC 3.A.1.3.4)" (TC 3.A.1.3.4)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (391 amino acids)

>MPMX19_05847 Inner membrane amino-acid ABC transporter permease protein YhdY (Azospirillum sp. SherDot2)
MSKHSPADQAPIPTGPVSPARWAASYEEEPSQASAPPQANGMTALKPFGWAKDNLFNTPL
NTALTLACLFLLWLVVPPMANWLLLNANWSGSSEACREAAGACWSVIVVKHRLIFFGTYP
YDEQWRPFLACALFVAMLGASGVRAFWRPWLAVAWALTLVGMGVLMWGGVAGLTYVPNDR
WGGLPITLMLSVFSIALAFPLSILLALGRQSSLPAIRTFCVGFIETMRGVPLVSVLFMAS
VMFPLFLPEGVTVDKLLRALAGMTLFTAAYLAEAVRGGLQAIPKGQYEAADALGLSYWQK
TMLIVLPQALRIVIPPIVNQFISAFKDTSLVTIVGLYDLLTAATVATTDPEWRPYFAEVY
VFAGLMFWIFCFSMSRYSQWLERLANRYTRR