Protein Info for MPMX19_05846 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 385 transmembrane" amino acids 16 to 34 (19 residues), see Phobius details amino acids 75 to 105 (31 residues), see Phobius details amino acids 118 to 140 (23 residues), see Phobius details amino acids 174 to 195 (22 residues), see Phobius details amino acids 209 to 234 (26 residues), see Phobius details amino acids 254 to 274 (21 residues), see Phobius details amino acids 298 to 316 (19 residues), see Phobius details amino acids 354 to 376 (23 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 75 to 142 (68 residues), 54.5 bits, see alignment E=7.1e-19 PF00528: BPD_transp_1" amino acids 250 to 380 (131 residues), 52.7 bits, see alignment E=2.3e-18

Best Hits

Swiss-Prot: 51% identical to YHDX_ECOLI: Putative amino-acid ABC transporter permease protein YhdX (yhdX) from Escherichia coli (strain K12)

KEGG orthology group: K09970, general L-amino acid transport system permease protein (inferred from 93% identity to azl:AZL_d00640)

Predicted SEED Role

"Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4)" (TC 3.A.1.3.4)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (385 amino acids)

>MPMX19_05846 hypothetical protein (Azospirillum sp. SherDot2)
MTNPVQALNSARVRGWLYQALFLACALAVAWYLVSNTLTNLATRGVATGFGFLQREAGFE
IGESLLPYSASDTYLTALVVGLLNTLAVSAAGVVLASVLGVLIGIGRLSSNWMVNRFATL
YVETVRNVPLLLQLVVWYTILNRLPSPREALEVLPGIFLSNRGMKFPVLVEHAGHGWILL
ALVAGIAAAFAAVRYGRRRRETTGKPFPTLPAVIAALLLPPALAFIVTGAPLAFDVPALA
GFNFEGGGSVTPEFTALLIGLSVYTAGFIAEIVRSGILAVPHGQTEAGLALGLSPGKILR
LVILPQALRVIVPPLTSQYLNLTKNSSLAVAIGYPDLVSVSNTSANQTGQVVEAVAMMML
VYLIISLAISGFMNWYNRRVALVTR