Protein Info for MPMX19_05842 in Azospirillum sp. SherDot2

Annotation: Inner membrane transport protein YdhP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 425 transmembrane" amino acids 22 to 47 (26 residues), see Phobius details amino acids 62 to 83 (22 residues), see Phobius details amino acids 90 to 111 (22 residues), see Phobius details amino acids 121 to 140 (20 residues), see Phobius details amino acids 152 to 170 (19 residues), see Phobius details amino acids 177 to 198 (22 residues), see Phobius details amino acids 221 to 243 (23 residues), see Phobius details amino acids 255 to 277 (23 residues), see Phobius details amino acids 283 to 303 (21 residues), see Phobius details amino acids 309 to 328 (20 residues), see Phobius details amino acids 349 to 370 (22 residues), see Phobius details amino acids 376 to 395 (20 residues), see Phobius details PF07690: MFS_1" amino acids 28 to 332 (305 residues), 143.9 bits, see alignment E=3.1e-46 amino acids 227 to 409 (183 residues), 49 bits, see alignment E=2.2e-17

Best Hits

KEGG orthology group: K08156, MFS transporter, DHA1 family, arabinose polymer transporter (inferred from 92% identity to azl:AZL_d00990)

Predicted SEED Role

"MFS transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (425 amino acids)

>MPMX19_05842 Inner membrane transport protein YdhP (Azospirillum sp. SherDot2)
MASAGHHGDLRAEAQLASAHPGLVLLALAMGGFAIGTTEFATMSLLPYFAQGLGIDEPTA
GHVISAYALGVVVGAPVIAVLAARVARRTLLIGLMAVFAAANVASAFSPSYGWMLAFRFM
SGLPHGAYFGVAALVAASLVPPQRRAQAVARTMLGLTVATVIGVPMANWIGQVLGWRWGF
GVVGLLALLTVVLVWIFAPNDRPHPNASPLRELGALKRRQVWLTLGIGAIGFGGMFAVYT
YVASTLMEVTQVSPAMVPVVLAVFGAGMTVGTLVSAWAADRALMPTVAFTLLWSAGSLAL
YPFAAGNVWLVSIVVFMIGCGGGLGTPLQTRLMDVAEDAQTLAAALNHSAFNAANALGPW
LGGMAIAAGWGWTSTGWVGAALALGGLAVWAVALLDDRATANRAASRAAESLKSESRLAE
ACAGD