Protein Info for MPMX19_05800 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 212 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 46 to 63 (18 residues), see Phobius details amino acids 69 to 87 (19 residues), see Phobius details amino acids 124 to 145 (22 residues), see Phobius details amino acids 151 to 172 (22 residues), see Phobius details amino acids 180 to 198 (19 residues), see Phobius details TIGR03717: integral membrane protein, YjbE family" amino acids 12 to 199 (188 residues), 225.9 bits, see alignment E=1.5e-71 PF03741: TerC" amino acids 15 to 198 (184 residues), 156.7 bits, see alignment E=2.7e-50

Best Hits

KEGG orthology group: None (inferred from 92% identity to azl:AZL_d01240)

Predicted SEED Role

"Integral membrane protein TerC family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (212 amino acids)

>MPMX19_05800 hypothetical protein (Azospirillum sp. SherDot2)
MTELFTTDALFALLQVIMIDLVLAGDNAIVIGLAAAGLPKDQRGKAILIGILAATVLRIG
FAAVTTQLLQIIGLLLAGGVLLLWVCWKMWRELRQSQDEDEAVESLENDDAAASGPRKTL
GQAVWQIVVADVSMSLDNVLAVAGAAREHLGVLVIGLTLSIALMGLAASFIARILHKHRW
LAYVGLAIILYVALHMIYRGALEVWPLVNGHA