Protein Info for MPMX19_05757 in Azospirillum sp. SherDot2

Annotation: DNA polymerase III subunit alpha

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1163 TIGR00594: DNA polymerase III, alpha subunit" amino acids 6 to 1043 (1038 residues), 1197.7 bits, see alignment E=0 PF02811: PHP" amino acids 8 to 184 (177 residues), 136.1 bits, see alignment E=2.9e-43 PF07733: DNA_pol3_alpha" amino acids 309 to 581 (273 residues), 343.3 bits, see alignment E=2.2e-106 PF17657: DNA_pol3_finger" amino acids 584 to 742 (159 residues), 208 bits, see alignment E=1.2e-65 PF14579: HHH_6" amino acids 817 to 909 (93 residues), 102.2 bits, see alignment E=3e-33

Best Hits

KEGG orthology group: K02337, DNA polymerase III subunit alpha [EC: 2.7.7.7] (inferred from 95% identity to azl:AZL_d01720)

Predicted SEED Role

"DNA polymerase III alpha subunit (EC 2.7.7.7)" in subsystem DNA-replication (EC 2.7.7.7)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.7.7

Use Curated BLAST to search for 2.7.7.7

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1163 amino acids)

>MPMX19_05757 DNA polymerase III subunit alpha (Azospirillum sp. SherDot2)
MPHADFIHLRVHSAYSLSEGAIKVKELVKLCLKQQMPAVAVTDTGNLFGALEFALAASDA
GLQPIIGTVLGITRVGPAQTKPGLPGKAAATPDQLVLLCQNEEGYRNLAALVSKAFLESD
PLAGPQVTLDALDGHSAGLIALTGGPGGSVGRLLHEGQKDLALDVLERLKRLFPGRLYVE
LQRHEGGRGHFAAAENAIEPALIDLAYAHDLPLVATNDCYFATADMYEAHDALMCIAEGA
YLSQEDRRRLTPDHRFKSAEEMRLLFADLPEALDNTVAIARRCSFLLKPIKPILPPFACE
GGRTEDDELRAQSRAGLEMRLEKVVYTPDMTPEQRAETRRTYFERLEFELDVIVKMKFPG
YFLIVSDFIKWAKNQDIPVGPGRGSGAGSVVAWALTITDLDPLRFGLLFERFLNPERVSM
PDFDIDFCQDRREEVIRYVQNKYGYDRVAQIITFGKLQARAVLRDVGRVLQMPYGQVDKI
CKMVPNNPANPVTLQQALDSEEMLRQARDGDDTVRHLIDIALKLEGLYRHASTHAAGVVI
ADRPLQELVPLYRDPRSDMPVTQFNMKYVEQAGLVKFDFLGLKTLTVLKTAVDLIPEKPD
LTTVPLDDEKSYQLLSRAEATGVFQLESSGMRDVLRRLKPNRLEDIIALVSLYRPGPMDN
IPKYIRVKNGEEKADYMHDSLEGILKETFGIMIYQEQVMQIAQVLSGYSLGGADLLRRAM
GKKIKEEMDNQRKIFCDGAESRGVKADLASMIFDQVMKFAGYGFNKSHAAAYALVAYHTA
YLKANHPVEFMAASMTLDLGNTDKLNVFRQELARLRVRLLTPDINKSDAIFGVEQLADGT
KAVRYALAAVKGVGQPAMKAVVEERRKNGPFKSLFDFARRLDLKTINKRQLENLACAGAF
DGLNPNRAQVHAALETIIRYAQAEAAERDSGIGNLFGGGGGGLPEPEMPKVKDWEPLEKL
KHEFGAIGFYLSAHPLDAYSGPLGRMKVVRSADLANVAKAGGMTRRAMAGIIVSKKEKTS
KSGNRFAFVELSDAAGGYEVTLFSEILAVNRALLEPGNAVLLTVDVQLNGEEIRLTCQEI
KPLEEAVASVSAGLRVVLRDPGPIEHLRATLDRLSRGKSRINVLVEVDPLKEIEIELPGS
YTITAQSRSALKAVPGVVEVAEL