Protein Info for MPMX19_05754 in Azospirillum sp. SherDot2

Annotation: Sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 756 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 299 to 323 (25 residues), see Phobius details PF02743: dCache_1" amino acids 55 to 240 (186 residues), 47.4 bits, see alignment E=3.8e-16 PF22588: dCache_1_like" amino acids 203 to 285 (83 residues), 44.2 bits, see alignment E=3.6e-15 PF02518: HATPase_c" amino acids 468 to 605 (138 residues), 63.6 bits, see alignment E=4.4e-21 PF00072: Response_reg" amino acids 638 to 748 (111 residues), 84.4 bits, see alignment E=1.3e-27

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (756 amino acids)

>MPMX19_05754 Sensor histidine kinase RcsC (Azospirillum sp. SherDot2)
MPIPPIRHWQAHLRASRPLRVLLLIGGLSVAVLLAATVQYIDSMRDREMEGAERELSTLN
LSLAEQTASATQSVDLVLTTIIEQLKSDGIDTPEEYIRRMGGRDTHQMLRARITGLPQLD
AVTMIAADGHLINFSRYYPIPPVNVADRDYFAYLRDHDTTAPYISEPVQNRGNGSWTVYL
ARRISGRDGSFVGLVLGAIELSYFQRIYKALQPDGDGSISLWRRDGILLARHPVLPDIGR
PLGQRHFLKVLERAKSGVYFSSGGLNDGARLVATRALADYPLVVNVTRRLDAVLDKWRIQ
AWTIGAASAVGIAALLLSLWALARQFSAYEAATRAMDAARRAVEGREQAEHALRQSQKME
AIGQLTGGVAHDFNNLLQAIGINLHVIDSRTEDERIAGPARLALQAVERGATLTQHLLAF
SRRQQLRPVPVDVATLVERTSRLLGRTLGQSVRIETEVAPGLWPAMIDPTQLEMALLNLA
LNARDAMPGGGTLWILAGNRTVAGPAAGDPAIGSRLPGAGPLPVQVEGLAAGDYVVLRVR
DTGTGMAAEVAARAFEPFFTTKEVGRGTGLGLSMVHGLATQSGGGVELDSWPGLGTTVTL
YLPRAEQAAEVAAAPPPPPPPARAKVAETVPVGAGCAILLVDDEELVRSATAGYLAQAGF
AVREAADAAAALSLLDHGFRPDVIVTDHMMPGMTGLEMARTLRARQDETPILMVTGYAED
LTSTAAAREMSLTVLSKPIEPSRLVRSIRDMASVEG