Protein Info for MPMX19_05744 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 694 signal peptide" amino acids 1 to 16 (16 residues), see Phobius details transmembrane" amino acids 17 to 34 (18 residues), see Phobius details amino acids 211 to 236 (26 residues), see Phobius details PF00672: HAMP" amino acids 234 to 280 (47 residues), 33.4 bits, see alignment 6.7e-12 PF00015: MCPsignal" amino acids 403 to 542 (140 residues), 107.3 bits, see alignment E=1.2e-34 PF07238: PilZ" amino acids 585 to 680 (96 residues), 33.9 bits, see alignment E=5.1e-12

Best Hits

Predicted SEED Role

"Methyl-accepting chemotaxis protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (694 amino acids)

>MPMX19_05744 hypothetical protein (Azospirillum sp. SherDot2)
MMPAGNILHAISIRAKVVAVAVFVFAAVGLSSVLTMRDMNRQTDHLSEVQHDTHDLVGSV
IPLVSLVGEIRFDVVQTQQWLTDVSATRGLDGMNDGPEKAADYARRFEEHSARATELAQA
LTLPQVVDEIGRARKAFGPYYEMGRRMAQAYIDGGPEAGNRIMSEFDSVADAMGDSMEAL
GASVVALSADRLKELTGGIGAVREAADGLRWTLIGAGLVILLMASACVVFLEAAMIRPLE
RLRRAMVALAGGSLDVEVGLNERRDEIGHMADTVRVFQQGARENARLRLAQEETRRRGEE
ERRQALEAMAEKVERETRVAVDHVAERTSRMSGNAGAMAESAVQVSDNAQNVAAAAQQAL
SNAETVAAATEELSASIGDIGMQVSTATQVTGRAVERAGLARSTIERLSVSVERIGAVAR
LIGDIASQTNLLALNATIEAARAGDAGRGFAVVANEVKNLASQTARSTEEIGSLIAEVES
VTASAVGVVGEVAETIDEVAGISSSIAAAVEEQAAATQEIARSVSQTSDAAKEVSLRIGR
VSAEADSTQNRAGEVRAVADDVAGGIDALRNVLIRVVRTATSDVDRRQRPRFAVSMGCGL
EVAGAGPVRAVVANLSAGGAMLTGAPDQVTGGHATGGMVTLRIDGVSRPLTARVKSSERG
RLHVKFDLSDADREAFEREVERLTHGLTPMAAVA