Protein Info for MPMX19_05742 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 221 signal peptide" amino acids 1 to 16 (16 residues), see Phobius details PF07638: Sigma70_ECF" amino acids 50 to 216 (167 residues), 25.6 bits, see alignment E=2.1e-09 TIGR02937: RNA polymerase sigma factor, sigma-70 family" amino acids 59 to 216 (158 residues), 95.4 bits, see alignment E=1.4e-31 PF04542: Sigma70_r2" amino acids 63 to 130 (68 residues), 62.6 bits, see alignment E=5e-21 PF08281: Sigma70_r4_2" amino acids 160 to 212 (53 residues), 47.4 bits, see alignment E=2.4e-16 PF04545: Sigma70_r4" amino acids 165 to 214 (50 residues), 45.7 bits, see alignment E=7.4e-16

Best Hits

KEGG orthology group: K03088, RNA polymerase sigma-70 factor, ECF subfamily (inferred from 88% identity to azl:AZL_d01850)

Predicted SEED Role

"RNA polymerase sigma-70 factor, ECF subfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (221 amino acids)

>MPMX19_05742 hypothetical protein (Azospirillum sp. SherDot2)
MIAPLATLLTHTAGADRAKPDMAKPDRAKAGLAARGCDDPAAARLSADLVAVAAGDRQAF
ARLFAHFAPRVKAYMLKLGMPAQRAEDLAQDTMLSVWRKAQLYDPAKAEAATWVFTIARN
LRIDALRRERHPEVSDDELLEHEDDRPPADELLDGDRRARRLRGALAALTPEQAEVVRLS
FFADLAHPAIAERLDVPLGTVKSRLRLAMAKIRKALGDDDR