Protein Info for MPMX19_05707 in Azospirillum sp. SherDot2

Annotation: Homoserine/homoserine lactone efflux protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 211 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 39 to 65 (27 residues), see Phobius details amino acids 74 to 93 (20 residues), see Phobius details amino acids 116 to 142 (27 residues), see Phobius details amino acids 148 to 170 (23 residues), see Phobius details amino acids 190 to 208 (19 residues), see Phobius details signal peptide" amino acids 28 to 28 (1 residues), see Phobius details PF01810: LysE" amino acids 15 to 207 (193 residues), 124 bits, see alignment E=2.8e-40

Best Hits

KEGG orthology group: None (inferred from 96% identity to azl:AZL_d02170)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (211 amino acids)

>MPMX19_05707 Homoserine/homoserine lactone efflux protein (Azospirillum sp. SherDot2)
MTWQTLAFFFATAFVISMTPGPNMLLAMSLGLRFGARRAAWGGAGMCAALAVMAALSAFG
LGALLSTSVLAFEIVRWAGVAYLTWLGIAAWRAPVEQPGERDAAAAASGEGTPVRLFLRG
TLVAFSNPKALVFMGALFPQFIDAAAPLAPQLVALVATMVVIEFGWIMAYATGGDRLAAK
LTTVSAAKSLNRLTGGLMIGAGGLLALARRV