Protein Info for MPMX19_05587 in Azospirillum sp. SherDot2
Annotation: Membrane lipoprotein TmpC
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K07335, basic membrane protein A and related proteins (inferred from 93% identity to azl:AZL_d03170)Predicted SEED Role
"Predicted nucleoside ABC transporter, substrate-binding component" in subsystem D-ribose utilization or Deoxyribose and Deoxynucleoside Catabolism
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (331 amino acids)
>MPMX19_05587 Membrane lipoprotein TmpC (Azospirillum sp. SherDot2) MKTRILAAMLAVTAAGAGVGGGAPALADDFSPAVVFDQGGKFDKSFNEAAYNGAERFKKE TGTAYREFEITNEGQREQAMRTLVRRGASVIVAVGFSQTAAVDKVAKESPKTKFCLIDDK LDAPNVQSVTFKEEEGSFLVGMAAALASKTGKVGFIGGMDIPLIRNFLTGYEQGVKHVAA ADEVFVNMTGTTPAAWNDPGRGAELAKSQFSRGADVVFAAAGATGLGVLQAAADAGKLSI GVDSNQNHVHPGKVLTSMVKRVDVVVYDCMKSAKDGSWKAGHRVVGLKEDGVGYALDDNN RKLIAPEMEAKLEEAKKQIIAGSLAVKPYQP