Protein Info for MPMX19_05550 in Azospirillum sp. SherDot2

Annotation: Photosystem I assembly protein Ycf3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1246 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF13432: TPR_16" amino acids 17 to 79 (63 residues), 19.6 bits, see alignment 6.8e-07 amino acids 64 to 111 (48 residues), 20.9 bits, see alignment (E = 2.6e-07) amino acids 154 to 217 (64 residues), 33.6 bits, see alignment 2.8e-11 amino acids 594 to 653 (60 residues), 17.6 bits, see alignment 2.7e-06 amino acids 773 to 825 (53 residues), 19.5 bits, see alignment (E = 7.1e-07) amino acids 866 to 925 (60 residues), 25 bits, see alignment 1.3e-08 PF13176: TPR_7" amino acids 49 to 79 (31 residues), 15.7 bits, see alignment (E = 8.1e-06) amino acids 151 to 183 (33 residues), 18.1 bits, see alignment (E = 1.4e-06) amino acids 220 to 248 (29 residues), 16.5 bits, see alignment (E = 4.5e-06) PF13181: TPR_8" amino acids 85 to 111 (27 residues), 16.1 bits, see alignment (E = 6.3e-06) amino acids 115 to 146 (32 residues), 12.3 bits, see alignment (E = 9.9e-05) amino acids 149 to 181 (33 residues), 23.6 bits, see alignment (E = 2.4e-08) PF13414: TPR_11" amino acids 88 to 128 (41 residues), 30.2 bits, see alignment (E = 1.7e-10) PF13424: TPR_12" amino acids 149 to 213 (65 residues), 34.6 bits, see alignment 1.1e-11 amino acids 183 to 244 (62 residues), 31.1 bits, see alignment 1.3e-10 PF07719: TPR_2" amino acids 149 to 182 (34 residues), 28.5 bits, see alignment (E = 6.3e-10) PF13428: TPR_14" amino acids 150 to 190 (41 residues), 24.4 bits, see alignment (E = 2.1e-08) PF13374: TPR_10" amino acids 154 to 177 (24 residues), 16.6 bits, see alignment (E = 3.8e-06) amino acids 183 to 212 (30 residues), 17.9 bits, see alignment (E = 1.5e-06) PF14559: TPR_19" amino acids 159 to 217 (59 residues), 29.3 bits, see alignment 5.2e-10 PF04733: Coatomer_E" amino acids 162 to 213 (52 residues), 21.8 bits, see alignment (E = 6.9e-08)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1246 amino acids)

>MPMX19_05550 Photosystem I assembly protein Ycf3 (Azospirillum sp. SherDot2)
MPPSAASRLSARLAALLREALAHHRAGDLDGAERTYRAMLAADGRNADALHLLGVLHHQR
GQDADAVRLIGQAVARRPGVADQHANLGLALHALGRLAEAEAEYRRALALRDAYAEAHNS
LGSALQDQDRLAEAGVHYRRALDLNARYAEAWANLGTLLRAQDDYAEAETALRHALRLDP
GHATALTNLGVVLKETGRPAEAEAAHLGALRLAPGDAETMVNLALLREAQGRGDEAEALY
AQALIHAPGFALARWNLALRLLGRGRLADGWEEYEARFASRRVSAGRSFSLPAFSEWTWD
GAPGRRLLVWREQGLGDELMFGTALPDLAERFGPEMLVVEVDARLTGLVGRALPGATVRA
QTADPAPAPAPAPAPAPADADAHLPMGSLPQLLRSGLADFPARPSWLAPDPLRLAEWRDR
LAALGPGLRVGLCWGSQNMLGERKASYTTLAGWAPLLTLPGLIPVTLQYDGREAEIAAVE
AQLGLRIRRWPGTDLKNDLEGVAALIAGLDLVVTVASSVGEMAGALGVPVWRFGPAGDWT
ALGTGVRPWFPSMRLWSARPGEGLPDVLARMAAELRRLAPPPALPPALQIEEWLAEARDL
HGSGRWPEAEKAYQRILDRGGEVPAALEGYALLGQQAGRPDIADTLLTRAIAAEPSADRH
KRRALARQEMGALADAEADWQAAAALAPEDVEALGNLGALRLSRGAAAEAMEATDAARRL
APFHAGLWINAGLARQAMGGAGRPFLMRALALDPAVAEAWTALSAEALRNPDRAAEAERT
ARRTLHLRPGDPAAVSNLGLAALALDRPAEAVAHLRLALQGRPGDLATLGNLALALERAG
DGAAAGLAWWRVILFAPGTGAGWAGLADLRQRQGRLDAALKGWGRALALEPGRAEWRYNQ
GNALHAAGRPVEADAAYRQAVEDDPALTLAAFNRGYAALAQGDLAAGWTGLEARFAAGQA
LPDRRFRMPAWEGGELTGKTLLVWREQGVGDELMHSACYPDLIARTLSGAGRVIVECEPR
LAALFARSFPQATVRAATEDPADADCHVPAGSLPLQLGWGLESFATQGGWLRADEAAVER
WRGWLGGTGSALTVGLCWRSGLRGALRDANYAPLTDWAPILTLPGLRLITLQYDECEAEL
ADAERRFGIAIHRPPLDLKNDLDGAAALTAALDLVISAGTSVAEMAGALGVPVWRIGPAG
DWTALGTGCRPWYPSMRLVCPEQGGTLGDALGAAGRALASLGTRVL