Protein Info for MPMX19_05540 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 410 transmembrane" amino acids 42 to 68 (27 residues), see Phobius details amino acids 182 to 203 (22 residues), see Phobius details amino acids 225 to 249 (25 residues), see Phobius details amino acids 378 to 398 (21 residues), see Phobius details PF03929: PepSY_TM" amino acids 41 to 401 (361 residues), 189 bits, see alignment E=8.7e-60

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (410 amino acids)

>MPMX19_05540 hypothetical protein (Azospirillum sp. SherDot2)
MHTESEHRVRPARTGSVAPAGWGIGLLSGVSRQRVRRFLLTMHLTLGLAVGALLAVTALT
GSLLVFYVDIDRMLTPELVLPAGQEAGRNAPVPLDRVVQALREAHPARGGGWRLELPDGP
DHPIMARYMKPEETAGKSFAPLMVAVNPYSAEVLSSRFWGRTAMTWVYDLHYLLLAGEGG
QLVLALGGIGSLLILASGVYLWWPAAGKWGRALQPRLRSGFVRQVFDIHVLAGVYGLVVL
LPLIVTGIVMERPDWVKPVVERLSPMTAPPVLVSAQDGTAVGAAVGADAALAAALARFPQ
AEPRWVEVPGQGGGAYHIRLFQTGEPGWRFPKTSVWVNGGDGTVMDVRDPTRWTFGDAFF
GWQHPLHNGECFGLCCRILVAVAGLLPAVLLATGAVRWRQKKRTRPARAV