Protein Info for MPMX19_05508 in Azospirillum sp. SherDot2

Annotation: Sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1180 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 36 to 59 (24 residues), see Phobius details amino acids 72 to 90 (19 residues), see Phobius details amino acids 118 to 137 (20 residues), see Phobius details amino acids 165 to 185 (21 residues), see Phobius details amino acids 197 to 224 (28 residues), see Phobius details amino acids 249 to 269 (21 residues), see Phobius details amino acids 288 to 309 (22 residues), see Phobius details amino acids 334 to 363 (30 residues), see Phobius details amino acids 384 to 404 (21 residues), see Phobius details amino acids 415 to 437 (23 residues), see Phobius details amino acids 445 to 466 (22 residues), see Phobius details amino acids 504 to 523 (20 residues), see Phobius details TIGR00229: PAS domain S-box protein" amino acids 643 to 765 (123 residues), 23.2 bits, see alignment E=3.2e-09 PF00989: PAS" amino acids 645 to 741 (97 residues), 26.1 bits, see alignment E=2.7e-09 PF08448: PAS_4" amino acids 650 to 760 (111 residues), 25.7 bits, see alignment E=3.9e-09 PF12860: PAS_7" amino acids 650 to 762 (113 residues), 136 bits, see alignment E=2.3e-43 PF00512: HisKA" amino acids 797 to 869 (73 residues), 37.1 bits, see alignment 9.6e-13 PF02518: HATPase_c" amino acids 914 to 1031 (118 residues), 80.2 bits, see alignment E=5.6e-26 PF00072: Response_reg" amino acids 1054 to 1165 (112 residues), 40.3 bits, see alignment E=1.1e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1180 amino acids)

>MPMX19_05508 Sensor histidine kinase RcsC (Azospirillum sp. SherDot2)
MQSWLVLAVSAAYLGVLFAIAWWGDRRTAGGALLSASPRATGILFALTLCIYNTSWSFYG
SVGRASASGFDFLPIYLAPMILLLAARPVLTKTIAITKAQNVTSIADFIGARYGKSQAVA
ALVTLTALVGVLPYIALQLKAVAASFDVLTAPSLAAPAALPPPVWGDTAFAVALSMAVFT
ILFGVRHINASEHHRGLMLAIAFESLVKLTVFLAVAAFIVWGMFDGYTDLIARPQAEPLL
SPDFTDPTWWSNTAISIIAFLCLPQMYHVMTVENDSPRHLRAAAWMYPSYLVALSALMIP
IAVAGLITFEDGINPDTFMITLPIAAGASGFSLLSFIGGLSAATGMVIVAAVSLSTMLCN
DVVMPLLLSRPRFAARVGRRDMVGTLLLVRRLSVVGILLLAYVMHRLVDRDYPLTVIGLL
SFVAVAQFGPAFFGGLYWRRANRVGALAGLGAGFLLWVYTLLVPSMARIVPVPDAFLDHG
PWGIGWLRPQALFGIEGLDPISHASLWSLLANLIAFVAGSLLARPSAVERTQAVFYTSAS
ADRDEDDTPQALARLADLRALAIRFVGAERGNAAFDAYAAGRKGETGPADLDAVRFTETL
IAGAIGAASARVVMAASLQGRSLSRGDAMAMLDEASEALRFNRKLLQATLENIGQGICVI
DADHRIAAWNHRYLELLDLPADMVRVGVPFADLIRFNERRGEYSAHDMTALLTNRDTANQ
QWPYRYERRRPDGTVLEIVANPLPEGGYVSTYTDVTERYRAAEALREANESLEHRVQERT
DALQQAKAEAEAANASKTRFLAAASHDLLQPLNAARLFVSALEESMRGPLPTPDQRESEC
GMIDNAAASLRSTEMLLGGLLDISSLDAGNVRVKMRSFAIDELLGGLGVEFSALAQERGL
TLKVVGCGAVVRSDPQLLRRVLQNFLSNAIRYTPKGRVLLGCRRRRDPLHGDRLRIEVWD
TGPGIPEAKRHEVFEEFRRLGGENGGGNPADKGLGLGLAIVDRIARLLDHPVSLRSTVGR
GTGFAVEVPMEQSRATPVTRPVSTPAALSAGLLVLCIDNEEPILAGLRALLGQWGCRVAT
ASDVEGALAALAPFDGALPDVVCVDYHVGDGQTGLAVLERLRELWDRPVKGLLLTADRSE
AVRAEAERCGCGVLYKPVKPASLRRFLNGAALQTAAVAER