Protein Info for MPMX19_05499 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 496 transmembrane" amino acids 23 to 44 (22 residues), see Phobius details amino acids 63 to 80 (18 residues), see Phobius details amino acids 85 to 103 (19 residues), see Phobius details amino acids 109 to 132 (24 residues), see Phobius details amino acids 154 to 172 (19 residues), see Phobius details amino acids 178 to 200 (23 residues), see Phobius details amino acids 205 to 224 (20 residues), see Phobius details amino acids 230 to 254 (25 residues), see Phobius details amino acids 261 to 281 (21 residues), see Phobius details amino acids 329 to 348 (20 residues), see Phobius details amino acids 381 to 400 (20 residues), see Phobius details amino acids 416 to 441 (26 residues), see Phobius details amino acids 453 to 469 (17 residues), see Phobius details PF11862: DUF3382" amino acids 24 to 84 (61 residues), 37.2 bits, see alignment E=2.9e-13 PF02653: BPD_transp_2" amino acids 179 to 465 (287 residues), 162.7 bits, see alignment E=1e-51

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 94% identity to azl:AZL_e02750)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (496 amino acids)

>MPMX19_05499 hypothetical protein (Azospirillum sp. SherDot2)
MTTHSNTVSSGARTAPRGVDWAATIKDAGLAAFVALLLTVPLVGLRTVDRPTGLGIEARP
EEVVASLLLVFLGRLGLGLIRQGMALPVLIVAVLCAGVGLVLPMPTQVLRLVLVLGGGVI
ALRAAMTVATGRSKLSQADRDKRMDRVAAKVQHASKYIGPVAVVFAAILPMTPLADRMLL
DIGILLLTYIMLGWGLNIVVGLAGLLDLGYVAFYAVGAYSYALLAHYFGLSFWLCLPLAG
LLAACSGVLLGFPVLRLRGDYFAIVTLGFGEIIRIILVNWYQFTGGPNGISGIPRPSFFG
IADFSRTPSEGMAAFHELFGLEFSPLHRIVFLYYLILALALVVNLFTLRVRKLPLGRAWE
ALREDDIACASLGINRTNMKLAAFAIAAMFGGFAGSFFATRQGFISPESFTFIESAIILA
IVVLGGMGSQIGVVVATLLVIGLPEAFRELADYRMLAFGAGMVVIMLWRPRGLLAHRDPT
ILLHGGKKPIPAGAAK