Protein Info for MPMX19_05311 in Azospirillum sp. SherDot2

Annotation: 4,4'-diapolycopene oxygenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 517 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF01266: DAO" amino acids 4 to 39 (36 residues), 32.1 bits, see alignment 3.3e-11 PF12831: FAD_oxidored" amino acids 5 to 42 (38 residues), 34.8 bits, see alignment 4.2e-12 PF00890: FAD_binding_2" amino acids 5 to 270 (266 residues), 22.7 bits, see alignment E=1.8e-08 TIGR02734: phytoene desaturase" amino acids 6 to 502 (497 residues), 409.9 bits, see alignment E=7.7e-127 PF13450: NAD_binding_8" amino acids 7 to 69 (63 residues), 48.7 bits, see alignment E=2.6e-16 PF01593: Amino_oxidase" amino acids 12 to 494 (483 residues), 84.6 bits, see alignment E=3.4e-27

Best Hits

KEGG orthology group: None (inferred from 70% identity to mea:Mex_1p3665)

Predicted SEED Role

"Phytoene desaturase, neurosporene or lycopene producing (EC 1.3.-.-) / 4,4'-diapolycopene oxidase" in subsystem Carotenoids (EC 1.3.-.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.3.-.-

Use Curated BLAST to search for 1.3.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (517 amino acids)

>MPMX19_05311 4,4'-diapolycopene oxygenase (Azospirillum sp. SherDot2)
MTDRIAVIGGGLGGLAAAVVLAARGHKVTLLEKNAWVGGKAAVLEEGGFRFDMGPTILTV
PRVLRRILEEAGCDLDQELDMVRLEPQWRCFFDDGTVLDLSENVGTMATELDRLAPGRGA
GEGYRRFQAMSERLHGISERFFFWKSVEDLGDTLNFRNSFNASTLSDVLALRMGSTVAGT
IRGHVPDARAAQMLDHFTQYVGSSPYGSPAVLCAIAHMQTNDGVWYPMGGTRAVPTALER
VARRLGVEIRTNTGVRRLQVERGRVVAVETDGGGRIPVSAAVSNMDSVRTYQELVGGPPA
KRFAKRRSYEPACSGVVFYLGLDRAYDHLLHHDFVFSRDPEEEFDWIYRQGEPAPDPTCY
IAAPARTEPGVAPAGGEALYVLVHTPYLRERHDWNRMLPAYRRVVFDKLKRTAGMPDLED
RIRVEHVLTPQDINDRYNVLNGAIYGLASHGRFMGAFKPGNRSRDVEGLYLAGGAAHPGP
GMPMVLMSGWIAADSLDQDMRDGVHGDAGAGSARAVA