Protein Info for MPMX19_05230 in Azospirillum sp. SherDot2

Annotation: putative MFS-type transporter YcaD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 412 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 39 to 61 (23 residues), see Phobius details amino acids 73 to 91 (19 residues), see Phobius details amino acids 98 to 119 (22 residues), see Phobius details amino acids 131 to 150 (20 residues), see Phobius details amino acids 157 to 178 (22 residues), see Phobius details amino acids 201 to 221 (21 residues), see Phobius details amino acids 230 to 253 (24 residues), see Phobius details amino acids 265 to 284 (20 residues), see Phobius details amino acids 290 to 311 (22 residues), see Phobius details amino acids 324 to 351 (28 residues), see Phobius details amino acids 355 to 374 (20 residues), see Phobius details PF07690: MFS_1" amino acids 11 to 303 (293 residues), 65.7 bits, see alignment E=1.8e-22 amino acids 233 to 388 (156 residues), 56.9 bits, see alignment E=8.5e-20

Best Hits

KEGG orthology group: None (inferred from 48% identity to pzu:PHZ_c2637)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (412 amino acids)

>MPMX19_05230 putative MFS-type transporter YcaD (Azospirillum sp. SherDot2)
MPPVVRSVASLLLGVAFLMLANGAMSTLIGLRLSATASGATAVGMITAAYYGGLTLGSLY
AHRIITRVGHIRAFSAFASVVSVAALSHALFVDAPLWALLRLTQGFCMAGLYMCIESWLN
GTATNESRGQLLSAYMVTLYGASGVGQQLLRLDDETGVRLFMIVSILLTLALVPVALTRT
TPPQLPNVSSFGIKRLYRSSPLGVAGVFISGAITGSIYGLAPVFGASSSFGVSGTALFMS
ALILGGMALQWPLGRLSDRFDRRSVIIGLSASLSLTSLGMIAAAGLDQPLALMLVAPLFG
GLAFTLYPVCLAHTNDYVRREDMVSASGGLILANSVGAIIGPPVASALMIATGPAGLFSF
VTGGALCATLYGLWRTRMRPPLPAEAQAAFRPLPQTTPTVSPLDPMSALRAR