Protein Info for MPMX19_05216 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 560 PF02465: FliD_N" amino acids 27 to 131 (105 residues), 61.4 bits, see alignment E=1.7e-20 PF07196: Flagellin_IN" amino acids 150 to 207 (58 residues), 39.5 bits, see alignment 7.9e-14 PF07195: FliD_C" amino acids 242 to 543 (302 residues), 141.9 bits, see alignment E=3.5e-45

Best Hits

KEGG orthology group: K02407, flagellar hook-associated protein 2 (inferred from 45% identity to pgv:SL003B_3964)

Predicted SEED Role

"Flagellar hook-associated protein FliD" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (560 amino acids)

>MPMX19_05216 hypothetical protein (Azospirillum sp. SherDot2)
MTTVSSTTSSTAATTGYSALSSSDSGTGIDYSLLIEAKVNARLAKADRIDTKITANEAKI
TAYTDLQDKLQAVSDAIDGLRNRSVSTGASSNLFGQRTAYVGDDDVFSAAVDDDTEVGTY
SVVVQQLATKHKIAADSVASKTSALGYSGSFTLQAADGSAVTIAMDSDDSLTDLRDAINA
SKSTSGVTASIVQVSDSSYQLILTSNNTGQTISMTDGGDGVLSSLGLTDSDGAIKNELVA
VQKAIVEVDGVTITRSSNTIDDAIEGVTLTLYSASPDTAISMEVSTDLSSIKSAITGFVD
AYNEYRDFVVTQQATTSDGTASSDATLFSDSLLRQIVRSVNSALNTSITTDDGTVLSMAS
LGISFNSSNELELDEDTLNSILSSDIDSVKQLLGLNMTSSSSQMSLLRYTSSASALSFTL
DIVRGDDGTLASASVGGDSSLFTVSGNRIIGATGSAYEGIVLVYSGNSGSVDIDFSQGLA
DKLFGVIDDASATYGSDLATAIDDLETRDTELESRSTDIKTKAETYRSTLTAYYARLEAA
AEQAALLLKQLTYKDSSSDS