Protein Info for MPMX19_05096 in Azospirillum sp. SherDot2
Annotation: L-cystine import ATP-binding protein TcyC
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 52% identical to NOCP_AGRFC: Nopaline permease ATP-binding protein P (nocP) from Agrobacterium fabrum (strain C58 / ATCC 33970)
KEGG orthology group: None (inferred from 93% identity to azl:AZL_a10170)Predicted SEED Role
"ABC-type polar amino acid transport system, ATPase component"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (275 amino acids)
>MPMX19_05096 L-cystine import ATP-binding protein TcyC (Azospirillum sp. SherDot2) MTAVSRTANPSRSMAQSDTVPMVSIRGVGKSFGTNEVLRDIDLTVNKSEVVCLIGPSGSG KSTLLRCINFLEVYDRGEIRIEGKLVGYSEDTPRRRLSNRDLRDLRRNVGMVFQQFNLWP HMTALENVAEALVQVRGMDKAAATSHARRMLDRVGLAAKADSYPARLSGGQQQRVAIARV IAMEPHLMLFDEPTSALDPELVGEVLQVMRDLAADGMTMVVVTHEMGFAANVADKVAFLD RGRIAAFGTPREVFHESAEPRVQQFLQTYHERNSF