Protein Info for MPMX19_05081 in Azospirillum sp. SherDot2

Annotation: Sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 801 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF00072: Response_reg" amino acids 105 to 214 (110 residues), 84 bits, see alignment E=1.8e-27 amino acids 654 to 735 (82 residues), 47.3 bits, see alignment E=4.4e-16 PF08447: PAS_3" amino acids 289 to 373 (85 residues), 57.7 bits, see alignment E=2.4e-19 PF02518: HATPase_c" amino acids 507 to 628 (122 residues), 70.1 bits, see alignment E=4.3e-23

Best Hits

KEGG orthology group: None (inferred from 88% identity to azl:AZL_c01480)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (801 amino acids)

>MPMX19_05081 Sensor histidine kinase RcsC (Azospirillum sp. SherDot2)
MTRRKLQPVRAVRRAPFVPLAASPVPAARRSRLLGTASAQPTGGDAVRQPPLPPAAAAVE
AAPAAPAAVPPATVTPPPAAVPAGCESGTMTTDSHPQPDKADVAILIVDDDPRNLFAVRE
TLEDLGAQLVLARSGEEALKHLLRQDFALILLDVHMPGMDGYETAGLIRLREKSRHIPII
FLTAINKDETHIFRGYATGAVDYMFKPVDPQILKCKVSVFVDLYRKTEEVKREVEAKQRL
LDENERVRREMRQAEQALRRSEERQAMILGQLPIVLYTADLTPGIPFRYLSDTTQTVLGC
PAARFIEDPNFWESGLHPDDRSRVLRQLASIHDAGLTTVEYRWRGPDGGERHLLDQAVVV
RDEDGRPAELFGTIMDVTETRQAQQQLAHAQKMEMVGQLTGGIAHDFNNMLMVVIGSLER
LVPGLADDPKAARRAEMALQAALRCSDMTRRLLTFARRQQLHPEPVDLGDLVAGMGELME
RTLGGGVAIAIEAPPADAEPLWIASVDRSQAESALLNLVINARDAMPGGGTLRISTANTR
FTEPQTGNGMSVPAGDYILLSVADSGCGMPAHVLERAFEPFFTTKETGKGTGLGLAMIHG
FVKQSGGLIGIDSKPGSGTVFRLYLPRAAMDSAHGVSADEDDGHEAFAGRGETVLVVDDD
ADVRSVAVQAVAALGYRVLEADGAEAALTLLDRQPVDLLFTDIVMPGGLNGRELALEGLR
RHPSLRVLFASGYANGTSAPGPEAGASTDAGGTADPGAVLGAVLSRAETLSKPYRDGDLA
RALRRALDLQAPLAPAEAVRG