Protein Info for MPMX19_04983 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1165 transmembrane" amino acids 735 to 756 (22 residues), see Phobius details PF01558: POR" amino acids 741 to 928 (188 residues), 74.1 bits, see alignment E=1.6e-24 PF20169: DUF6537" amino acids 952 to 1151 (200 residues), 235.3 bits, see alignment E=6.4e-74

Best Hits

Predicted SEED Role

"Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits" in subsystem Aromatic amino acid interconversions with aryl acids

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1165 amino acids)

>MPMX19_04983 hypothetical protein (Azospirillum sp. SherDot2)
MDGMQPGLRGGLRPEQAEIDRTYRLDDRYCRAEGQVYLSGTQALVRLLLLQAESDRRAGL
NTAGFVSGYRGSPLGGLDQALWQASRHLDANAITFVPGVNEDLGATAVMGTQQVESSGEA
TVDGVFGMWYGKGPGVDRSGDVLKHANAYGSSPRGGVLAVAGDDHGCVSSSMPHQSDLAM
IAWSMPVLNPSGVREYLDFGLYGYALSRFSGAWVGFKAISESVESSATVQLPSLERGFLP
VAFDPPPGGLHYRWPDLPSLAIEERLAAKVAAVKAFARVNRIDRSVLGTGGWLRIVTTGK
AHLDLMEALRLLGIGPAEAAEIGLSVHKIGLSWPLEPDFALTAARGAEEILVVEEKAPVV
EGQLKDLLFHLPAGERPRAVVGKTDEFGAHLLPATGELRPWIVAKALVERIRHRFPQRDF
SARLADLLPGEAPAAPTLPRTPYFCSGCPHNSSTKVPEGSKAMAGIGCHFMASWMDRDTV
GLSQMGGEGVSWIGQAPFSKRPHIFQNLGEGTYYHSGLLAIRQAVASRINITYKILFNDA
VAMTGGQPVDGPISVDAITRQLAAEGITRIAVVSDAPEKYDSRSALAPFTTVHHREELDA
VQREMREISGVTAIVYEQTCAAEKRRRRKRGTMADPARRMVINDLVCEGCGDCGKKSNCL
SVQPKQTEFGVKRQIDQSSCNKDYSCADGFCPSFVSVVGGTLRKPNPDSIAARFADDLAA
LPLPHFSSTDDPAEILIVGVGGTGVVTIGAVLAMAAHLEGKASSVLDFMGFAQKGGAVYS
YLRVAGDTARLNQARIDPKQAQLVLACDTVVAASPDALKTVRLGRTRVVANAHVAPTGAF
TRDGSKLPDAGSLLRSLRRAAGPERVEVVDANRVVTALFGDSILANVFLMGVAFQKGLLP
VGLEALTRAIELNGTGVPANLRAFAFGRLAVHRPELLATLGAEEEAPATDLASIVERRAA
FLADYQDRAYADRYRALVERARQAEARVAPASTALAEAVARSAFKLMAYKDEYEVARLHS
DPTFAKSLKDRFDGEWKPVFHLAPPLLSRDTNGYGEPRKMALGAWILPVFRGLAAMKRLR
GTALDPFGYTAERKMERALVARYEATVAEIAKRLTADRLATAVELAALPQEIRGFGPVKH
RALEAVEPRWQALEQRLRERTAQAA