Protein Info for MPMX19_04925 in Azospirillum sp. SherDot2

Annotation: sn-glycerol-3-phosphate import ATP-binding protein UgpC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 369 PF00005: ABC_tran" amino acids 30 to 171 (142 residues), 122 bits, see alignment E=3e-39 TIGR01187: polyamine ABC transporter, ATP-binding protein" amino acids 44 to 338 (295 residues), 362.1 bits, see alignment E=1.2e-112 PF08402: TOBE_2" amino acids 288 to 366 (79 residues), 58 bits, see alignment E=8.7e-20

Best Hits

Swiss-Prot: 47% identical to POTA_PSEF5: Spermidine/putrescine import ATP-binding protein PotA (potA) from Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)

KEGG orthology group: K02052, putative spermidine/putrescine transport system ATP-binding protein (inferred from 96% identity to azl:AZL_c00210)

Predicted SEED Role

"Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1)" in subsystem Polyamine Metabolism (TC 3.A.1.11.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (369 amino acids)

>MPMX19_04925 sn-glycerol-3-phosphate import ATP-binding protein UgpC (Azospirillum sp. SherDot2)
MDGGMIATTDTLVRFTGVQKTYDGEHLVVKSLDLDIRKGEFLTLLGPSGSGKTTTLMMLA
GFEVPTHGDIFIGDRPIKNVPPHKRDIGMVFQNYALFPHLTIEENVAFPLSVRGVSKAET
RDRVRAALDMIKLGNLAGRRPGQLSGGQQQRVALARALVFNPALVLMDEPLGALDKRLRE
HMQLEIKRLHETMGLTVVYVTHDQGEALTMSDRIAVFNDGIVQQIDRPDALYERPVNSFV
ANFIGENNVLSGVVENIEQGWARVALDAGGSVVAQAVNIGGAGNRTSLSLRPERVAIETG
DSGDSTMNRLPATLTDLIYLGDHTLAVLSTPANPEFMVKLPAGSYAGLVPGQDVYIAFRP
EDCRALDPV