Protein Info for MPMX19_04896 in Azospirillum sp. SherDot2

Annotation: Outer membrane protein W

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 235 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF03922: OmpW" amino acids 34 to 235 (202 residues), 175.4 bits, see alignment E=2e-55 PF13505: OMP_b-brl" amino acids 69 to 235 (167 residues), 40.8 bits, see alignment E=4e-14 PF02462: Opacity" amino acids 121 to 196 (76 residues), 21.2 bits, see alignment E=3.8e-08

Best Hits

KEGG orthology group: K07275, outer membrane protein (inferred from 90% identity to azl:AZL_c00520)

Predicted SEED Role

"Outer membrane protein W precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (235 amino acids)

>MPMX19_04896 Outer membrane protein W (Azospirillum sp. SherDot2)
MTILSRAAAALLATSALVAIASPSLAQDFKGKSAGDIVVRARGLAVLPQEKGTINNTTLG
DVGSAKVGNDYIPEVDFTYFFTDNIAAELIAGTSRHRVKGNLIAAAGGVTEIGKVSLLPP
TLTVQYHFLPKERISPYVGAGINYTLFYNEDAAESPNAGGLRITDTNYKNRFGWALQAGV
DVALTGNWSLNFDVKKVFLKTDVTANARLGSAVLPVTSKVTLDPWLVGVGVGYRF