Protein Info for MPMX19_04889 in Azospirillum sp. SherDot2

Annotation: Chromosome partition protein Smc

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1153 TIGR02168: chromosome segregation protein SMC" amino acids 3 to 1143 (1141 residues), 851.4 bits, see alignment E=5.8e-260 PF02463: SMC_N" amino acids 4 to 1136 (1133 residues), 194.2 bits, see alignment E=4.3e-61 PF13476: AAA_23" amino acids 5 to 227 (223 residues), 45.6 bits, see alignment E=2.7e-15

Best Hits

Swiss-Prot: 48% identical to SMC_RHOS1: Chromosome partition protein Smc (smc) from Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9)

KEGG orthology group: K03529, chromosome segregation protein (inferred from 94% identity to azl:AZL_c00590)

Predicted SEED Role

"Chromosome partition protein smc" in subsystem Two cell division clusters relating to chromosome partitioning

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1153 amino acids)

>MPMX19_04889 Chromosome partition protein Smc (Azospirillum sp. SherDot2)
MQFTRLRLSGFKSFVDATDLVIEPGMTGIVGPNGCGKSNLVEALRWVMGETSAKRMRGDD
MDDVIFGGTSSRPARNLGEVTLAVDNRSRTAPAGFNEHDELEITRRIERGSGSDYRINGK
LVRARDVQLLFADNASGAGSPALVSQGKVAQIISAKPQDRRALLEEAAGITGLHSRRHEA
ELRLKAAETNLTRLDDVIGAMDTQLQSLKKQARQASRYRNLSDQIRKAEAVLWHLRWLAA
QEERARAHAAFEASEAEVRDRMLAVNQLAARRTEAAAGLPEKRQDEARAASALQRLVIAR
EQLDAEEKRVADQQRALEARLRQIAGDLGREEALAADAGEALARLMAERDRLIEAQADEE
MLEDAAGEALAEAREQVDALDRELTRLTEAVATDEARRAATQRQAAELETRAAGLAKRLA
EQQAQRAALEAEIAARADLSEAELAVELAEQRLEQARDAAEAAEQAKAEAEPAQSRARET
LSAADSARARLRAEERALAELLEAGAGGQFPPLVDAVTVSPGYEGALAAALGDALTAPLD
TAAPVHWRMLPAYEAAAPLPAGAVPLSNHVQGPPAAGRALAHIAVVADAAEGAALAATLA
PGQVLVSRDGGAWRWDGLTVQAGAPTAAAIRLKQRNRLAELRGELELAEEQVELAREALD
AAKRTVEEAAQADRRARDAVRDGFAALNAARDRHAKLAREADAASTRLAALAEAVERLAA
EEGEAAARRDEVLELLEQLPDPREGREQVNDRRTALAERRAVLSERQNALDRLTREAQAR
RQRLAAIQSETASWDTRSAGAGGRVAELRQRAAEAEGEIALLAGRPVEIATERQELLDRI
ALAERERKRAADALAEAESRLAATEQALHDAEAALADGREARARAEAAVSSALQQERTLT
ERIAERLDCRPEDTRAAADLDPAEPMPDAGAVEARLDKLTRERENMGPVNLRAEIEAEEL
DAQIGGLNGEREDLTAAIARLRQGISSLNREARERLVASFDVVNRDFQELFTRLFGGGKA
YLELVNAEDPLNAGLEIYASPPGKKLQVLSLLSGGEQALTALSLLFAVFRSNPAPICVLD
EVDAPLDEANVGRFCDLVEDIARQGDTRFLIITHHRLTMARVDRLFGVTMVERGVSQLVS
VDLSRAEELRGVA