Protein Info for MPMX19_04877 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 628 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 46 to 64 (19 residues), see Phobius details amino acids 76 to 97 (22 residues), see Phobius details amino acids 199 to 218 (20 residues), see Phobius details amino acids 253 to 275 (23 residues), see Phobius details amino acids 281 to 308 (28 residues), see Phobius details amino acids 315 to 333 (19 residues), see Phobius details amino acids 340 to 360 (21 residues), see Phobius details amino acids 367 to 386 (20 residues), see Phobius details PF01594: AI-2E_transport" amino acids 28 to 148 (121 residues), 65.4 bits, see alignment E=2.6e-22 amino acids 188 to 381 (194 residues), 123.4 bits, see alignment E=6.1e-40

Best Hits

Predicted SEED Role

"transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (628 amino acids)

>MPMX19_04877 hypothetical protein (Azospirillum sp. SherDot2)
MAEDTARRLQARPIAVTKAAPPVSTQTILLIITLIVVTLYLAADILMPIALAVLLSFVLT
PIVTRLQRWRLGRVPSVLAVVALLFLGITGFGAVVGSQLGDLADNLPTYQRNIHTKIESL
RSATASAGDRGALKQATDAFRDLQQEIERATAGAAPNQLPGAGPATQAGAPTHREPVPVR
IDQSDTGVFDLVSRVLGPAMTPIATAGMVLVFTIFMLLQREDLRDRMIRLVGSGDLSRTT
EAMNDAGERVSRYLLMQVVVNVTYGLPIGVGLWLLGVPNPLLWGLLATVLRFIPFLGPVI
ASAFPILLSFAVDTGWTLPLLCIALFVAVELFSNNVVEPWLYGTATGLSSLAIIVAAVVW
TTLWGPIGLLLATPLTVCLVVLGRHVPQLHFLEVMLGDRPVLPDEAKIYQRLLARDPVEA
TELAEERLGKSTPVELADGLLLPALSLAEQERQRGSLNPDGRQAVAEGMAGLLDELSDAP
APADNAPRVLCVGARNNLDEAAAGLLAYLLAGRGIHADVVPCEKASTRAIASLGTTGVDA
VVLSSLNPTALGHCRRMMRRLRMHFGPRVPILLCLWSAHPESEVPERASAETDANLVATG
MAGALAQLEELNIGAAPAAVAEAAPSPT