Protein Info for MPMX19_04872 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 573 transmembrane" amino acids 38 to 61 (24 residues), see Phobius details amino acids 180 to 206 (27 residues), see Phobius details PF00672: HAMP" amino acids 201 to 252 (52 residues), 57 bits, see alignment 2e-19 PF07228: SpoIIE" amino acids 333 to 543 (211 residues), 63.7 bits, see alignment E=2.3e-21

Best Hits

KEGG orthology group: None (inferred from 89% identity to azl:AZL_c04640)

Predicted SEED Role

"Serine phosphatase RsbU, regulator of sigma subunit" in subsystem SigmaB stress responce regulation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (573 amino acids)

>MPMX19_04872 hypothetical protein (Azospirillum sp. SherDot2)
MSVTGWDDTESYTLRGAGPQGSGDEVVRAGGSSLLTRVILMIVGCTLLVGLIAMGVSSVL
VGRQQREALTHRATLVGTLQASAMGQAVWEFDTRAVEGMIRGLLAEDPAVRSVKVWAASG
GRGGHGEPLVALERPAGRAELTTVEKQIVMSGGNGERTMVGLLRMTYSLEEAESATMTAL
APMAGLVFFSLLAVIGMISILLNRLVLAPLARLTRSAGAIAAGDYRVRLRNTRADEIGQL
TVAFNHMAETVHDYTERLEQRVAERTEELRQSNEQLAVVNRQVMDSIQYASLLQSAILPD
EREMARHLDGVCVLWRPRDVVGGDFHIFRALEDGRFLIGVADCSGHGVPGAFMTMTVSAI
LDHVLSETPDSDPAAILGGLNRMVRAALARGRDNPRFDNGLDIGLCLVRPDRGDLLFAGG
RIGLHIVDSAAGSSPNAGTAGGTVGEVKGDAQSLGYRRSDSGHRFTTHRVDLAPGRSFYL
TTDGFLDQAGGTRGFGFGNRRFTAMLLEHDAIPMTERRAAFAQALAEHQGERAQRDDITL
VGFTVSPAAAPAATPVLAAASAPDASSSHPVHP