Protein Info for MPMX19_04865 in Azospirillum sp. SherDot2

Annotation: Sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 495 TIGR00229: PAS domain S-box protein" amino acids 28 to 136 (109 residues), 43.2 bits, see alignment E=2e-15 PF13188: PAS_8" amino acids 29 to 73 (45 residues), 22.5 bits, see alignment 2.5e-08 PF13426: PAS_9" amino acids 46 to 134 (89 residues), 48.4 bits, see alignment E=3e-16 PF00989: PAS" amino acids 48 to 136 (89 residues), 45 bits, see alignment E=3.1e-15 PF08448: PAS_4" amino acids 48 to 140 (93 residues), 26.8 bits, see alignment E=1.5e-09 PF00512: HisKA" amino acids 269 to 332 (64 residues), 32.3 bits, see alignment E=2.6e-11 PF02518: HATPase_c" amino acids 377 to 486 (110 residues), 81 bits, see alignment E=2.7e-26

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (495 amino acids)

>MPMX19_04865 Sensor histidine kinase RcsC (Azospirillum sp. SherDot2)
MSDDHGFKIAGTAGAGMKAKPLVVQPLWDHMDHAVIVTDSRLDAPGPTILYVNRAFTTLT
GYRADEAIGRSPRFLHCHRTDPAVVATIRRDLQQGGAARVSLVNRRKDGGDYLCSLVITP
LVGPRGETEHFICVAQALKEDRTPDALMRLSAELEQAQTLIEDLERRQSDADELIERQTR
ELAVMTERYRHSLAQLDAIQERLAIRETALERRGRDFERSDSELHASLEELRAMDEELRV
TLDQMEEANSQLARTNEELRRLQAADADKLQLLASASHDLRQPVMSMGLFLDVLRNRLGE
AERPIMGGLLAAHLSIRTLLEGMLDTARLDAGVLEPMIEPLPVATMLEIIHGEFLPQAEM
RGLRFRAVPSTATVLSDAQLLERILRNLVANALKYTVSGKILLGCRRCGDCLRIEVWDTG
PGIPEHSQQAIFEEFRQLDNPSRDQKRGVGLGLAIVSRLVGRLGHAVGLRSWPDRGSVFS
VTVPLADGRRRRRHH