Protein Info for MPMX19_04839 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1007 transmembrane" amino acids 21 to 39 (19 residues), see Phobius details amino acids 51 to 72 (22 residues), see Phobius details amino acids 83 to 106 (24 residues), see Phobius details amino acids 121 to 143 (23 residues), see Phobius details amino acids 155 to 174 (20 residues), see Phobius details amino acids 194 to 212 (19 residues), see Phobius details amino acids 224 to 246 (23 residues), see Phobius details PF17159: MASE3" amino acids 47 to 277 (231 residues), 226.7 bits, see alignment E=1.1e-70 TIGR00229: PAS domain S-box protein" amino acids 294 to 419 (126 residues), 45.4 bits, see alignment E=8.2e-16 amino acids 428 to 561 (134 residues), 45.2 bits, see alignment E=9.3e-16 PF00989: PAS" amino acids 299 to 409 (111 residues), 60.8 bits, see alignment E=4.3e-20 amino acids 429 to 552 (124 residues), 34.7 bits, see alignment E=5.7e-12 PF08448: PAS_4" amino acids 301 to 413 (113 residues), 47.3 bits, see alignment E=7.6e-16 amino acids 430 to 557 (128 residues), 30.3 bits, see alignment E=1.5e-10 PF13188: PAS_8" amino acids 301 to 348 (48 residues), 15.2 bits, see alignment 6e-06 amino acids 429 to 478 (50 residues), 16.2 bits, see alignment 2.8e-06 PF13426: PAS_9" amino acids 305 to 411 (107 residues), 30.5 bits, see alignment E=1.3e-10 amino acids 436 to 554 (119 residues), 27.7 bits, see alignment E=9.4e-10 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 562 to 731 (170 residues), 133.2 bits, see alignment E=7.3e-43 PF00990: GGDEF" amino acids 566 to 728 (163 residues), 149.6 bits, see alignment E=2.3e-47 PF00563: EAL" amino acids 749 to 982 (234 residues), 230.8 bits, see alignment E=5.5e-72

Best Hits

Predicted SEED Role

"diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)" in subsystem Bacterial hemoglobins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1007 amino acids)

>MPMX19_04839 hypothetical protein (Azospirillum sp. SherDot2)
MTATVPKQTGTVQGRAKPPGAIGTLVTLSVPFLLVLEGARVPGSVELAGYLPLHTFFETF
AIAVATLIFAIGWHSRNDDTPPALLVLSTCFLGVALLDFGHLLSFAGMPDFVTPAGPEKA
IAFWFGARLMVALALLMAAVLPWKVGAANSAALRYPLIGGVLLSSAAIFWAVLWHPDLLP
RTYVDGEGLTPLKVAAEYLLVLLYAAAALMFYRRRHAARTLDVHRMVIAAIAIAISELCF
TLYLSVYDLANMAGHVYKVIGYWYLYRAVFVTAVHHPYDALHQSERDLWREKERARVTLL
SIGDGLIATDTAGRVSLMNPVAERLTGWTLGEAAGRPVTEVFDIENAETGQRVPVPVEQV
LKNGEMVGLANHTVLVACDGTRSHIADMASPIRDRDGTLHGVVMVFQDVTETYASREALK
DSLSLNTGILESAACGIIATTLDGVVRVFNREAERIFGYPAAEMIGSADLPRLYDPDELR
AHADGLSIELDRPVKADFAALVAHTRCSGRPEPGEWTGVRRNGARISISTVTSVLRDSGG
AVRGYLTVAMDVTERKQAERQIENLAFYDPLTNLPNRRLLMEHLDVHLRAARLGARCGAL
MFLDLDDFKGLNDARGHMVGDMLLRELAARLNATLRKGDLVCRLSGDEFVILLPDIGTTL
EEATAIASKVAEKLRLAVAQPFQLDCCEHSIFASIGLTVFPKTPDESVEDLLKQADTAMY
AAKDGGRNTIRDYDPAMLIEAQARLLLLQDLRKAVDAGEFTLFLQPQTSADGTLVAAEAL
IRWQHPQRGFVAPGAFIAEAEESGLILPIGDWVLMEACHVLRRLADAGSDCHLSVNISPR
QFRQPNFCAGVIAALRATRTDPRRLMLEITEGIAVGDCADTAAKMSELAALGISFSLDDF
GTGFSSLSYLKRLPVREIKIDRSFVQDVDSNSHNAVLVETMLSIASRLGLKVVAEGVETA
AERDFLKDRGCAVFQGYHFDRPMSVEDFIAKYMKKTEIAEMEEPAHA