Protein Info for MPMX19_04716 in Azospirillum sp. SherDot2

Annotation: Vitamin B12 import ATP-binding protein BtuD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 580 PF00005: ABC_tran" amino acids 67 to 215 (149 residues), 79.1 bits, see alignment E=4.9e-26 PF00015: MCPsignal" amino acids 385 to 541 (157 residues), 102.5 bits, see alignment E=2.5e-33

Best Hits

Predicted SEED Role

"L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1)" in subsystem Choline and Betaine Uptake and Betaine Biosynthesis (TC 3.A.1.12.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (580 amino acids)

>MPMX19_04716 Vitamin B12 import ATP-binding protein BtuD (Azospirillum sp. SherDot2)
MNSPAHQQGIVPDGTGQDSVPDGTGMLSVTGLCKLYGGNAARAVTMLHAGKDHADIRREA
GTAVAVADVSFGLAAGEILAILGRSNSGKSTLIRMVNRLVEPTSGIVCLNGRDMAAMKPA
ELVAARRDTMAMTFGAVALMPNRTVLENLAFGLEVAGLRRRERQDRARAVLARMGLAHLA
DRRPLEIPSEARLRIGLARSLIGDPPLLLMDAPFAGVDPVLRLELEAEFLDWQRAHRAAV
LFTTQDPDEAMRIADRIAFMENGRFAQVGTLDEILGSPANDHVRSAFQDIAARRRERQRS
VQLEELISHFERTAMAGLDTVDSSAGALDGTARQLTGIIDRTNEQAGETVVAAEQIASNV
QSVAALADETFRSLGEIRLRIDNSTRIALSAVEEARKADRSVHSLRQSADGIGNVVRIID
EITGQTNLLALNATIEAARAGEAGKGFAVVAQEVRQLASQTAKATQDVSIRIQAMQDATG
NAAQALQSITTVIEEISTISVAIAKSMEAQAAASATIHASIDQAASGAGVVARNARHVTG
GARDTESATRHVLSAAADLAGQTVRLRGSIEQLLDGIRTG