Protein Info for MPMX19_04661 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 332 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 29 to 49 (21 residues), see Phobius details amino acids 55 to 75 (21 residues), see Phobius details amino acids 81 to 104 (24 residues), see Phobius details amino acids 112 to 142 (31 residues), see Phobius details amino acids 157 to 177 (21 residues), see Phobius details amino acids 210 to 231 (22 residues), see Phobius details amino acids 243 to 268 (26 residues), see Phobius details amino acids 287 to 309 (23 residues), see Phobius details PF02653: BPD_transp_2" amino acids 29 to 298 (270 residues), 142.6 bits, see alignment E=6.8e-46

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 69% identity to azc:AZC_2111)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (332 amino acids)

>MPMX19_04661 hypothetical protein (Azospirillum sp. SherDot2)
MTARDLIPIAVLTLLAALLPLVVTSSPVLNFLVFMLIVALGAQGWNILGGFGGQFSFGHA
AFFGTGAYVTAILQLRYGVNAWAGLVLATLAGAAVGWVIGFLSFRSGLRGSYFALVTLAF
AEVFRILANAASFTGGAAGLLIKLDVRAVNLQFDDRAVFYWLVLAFVAAVLLLTRWIQRS
RFGAQLVAVRENEDAAKALGVNSLTVKLRAIALSGGVTALSGCLYAQYFLYIDANIAYGS
WISVELLLAPIIGGVGTVFGPVVGALTLHGLGEVAKQFAGRIPGIDLIVFGGVLVLAVAF
ARGGILGLLERLRDRGRGMVTRGPKEVSHAGR