Protein Info for MPMX19_04617 in Azospirillum sp. SherDot2

Annotation: High-affinity branched-chain amino acid transport system permease protein LivH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 295 transmembrane" amino acids 12 to 37 (26 residues), see Phobius details amino acids 43 to 62 (20 residues), see Phobius details amino acids 68 to 87 (20 residues), see Phobius details amino acids 99 to 118 (20 residues), see Phobius details amino acids 149 to 168 (20 residues), see Phobius details amino acids 192 to 220 (29 residues), see Phobius details amino acids 229 to 259 (31 residues), see Phobius details amino acids 270 to 291 (22 residues), see Phobius details PF02653: BPD_transp_2" amino acids 17 to 283 (267 residues), 129 bits, see alignment E=9.6e-42

Best Hits

KEGG orthology group: K01997, branched-chain amino acid transport system permease protein (inferred from 88% identity to azl:AZL_014090)

Predicted SEED Role

"High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (295 amino acids)

>MPMX19_04617 High-affinity branched-chain amino acid transport system permease protein LivH (Azospirillum sp. SherDot2)
MFQFLGIPPQALFGQLLLGLINGSFYALLSLGLAVIFGMLNVINFAHGALYMVGAFVAWL
LLTSVGVGYWGALVLAPLTVGLLGIVLEKTMLSRLYKLDHLYGLLLTFGLALILEGAFRH
QYGVSGQPYPIPDALKGGQNLGFMFLPNYRAWVVVASLTVCFGTWFAIERTKLGAYLRAA
TENPTLVQAFGINVPVMVSLTYGFGVALAGLAGVLAAPIYQVSPLMGSSLIIVVFAVVVI
GGMGSILGAIVTGLGLGLLEGLTKIFYPEASNIVVFVIMAIVLLIKPAGLFGRER