Protein Info for MPMX19_04586 in Azospirillum sp. SherDot2

Annotation: High-affinity branched-chain amino acid transport system permease protein LivH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 308 transmembrane" amino acids 15 to 40 (26 residues), see Phobius details amino acids 52 to 71 (20 residues), see Phobius details amino acids 77 to 100 (24 residues), see Phobius details amino acids 112 to 131 (20 residues), see Phobius details amino acids 158 to 178 (21 residues), see Phobius details amino acids 211 to 232 (22 residues), see Phobius details amino acids 240 to 264 (25 residues), see Phobius details amino acids 275 to 297 (23 residues), see Phobius details TIGR03409: urea ABC transporter, permease protein UrtB" amino acids 16 to 307 (292 residues), 394.7 bits, see alignment E=1.6e-122 PF02653: BPD_transp_2" amino acids 20 to 294 (275 residues), 126.5 bits, see alignment E=5.4e-41

Best Hits

KEGG orthology group: K01997, branched-chain amino acid transport system permease protein (inferred from 84% identity to sno:Snov_2421)

Predicted SEED Role

"Urea ABC transporter, permease protein UrtB" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (308 amino acids)

>MPMX19_04586 High-affinity branched-chain amino acid transport system permease protein LivH (Azospirillum sp. SherDot2)
MFEGYSLAELGSIFAMQGFAGLILFSVFVLMALGLAIIFGQMGVINMAHGEFMILGAYVT
YLCSNFISSTAPALFPAYFFIAMALAFLASGALGMLVEWAMIRFLYRRPLDTLLATWGLS
LILQQIFRSVFGAREVGVVLPDWLMGSVAVTDTIEVPINGLFVMGLTMTITVVIYAVMFR
SRWGQGVRAVMQNRVMAGAVGINTEKVDRYTFGLGCGIAGVAGSAFTMVGSTGPTSGQLY
IVDTFLVVVFGGAQSLIGTIASAFTISQAQSTMEFFLSGSTAKVLTLLTVVVILMLRPQG
LFVLKVRR