Protein Info for MPMX19_04540 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 299 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 31 to 51 (21 residues), see Phobius details amino acids 57 to 76 (20 residues), see Phobius details amino acids 85 to 102 (18 residues), see Phobius details amino acids 129 to 149 (21 residues), see Phobius details amino acids 185 to 206 (22 residues), see Phobius details amino acids 218 to 247 (30 residues), see Phobius details amino acids 264 to 282 (19 residues), see Phobius details PF02653: BPD_transp_2" amino acids 6 to 259 (254 residues), 138.7 bits, see alignment E=1e-44

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 49% identity to bcm:Bcenmc03_6243)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (299 amino acids)

>MPMX19_04540 hypothetical protein (Azospirillum sp. SherDot2)
MLEFCLHVLIMAAIFGIAAVSLNLQAGTGGLLNFGQIALFGIGAYAVAILTRAGLPWPAA
LLAGMGAAALGGFAIGRLGRDLAAEYWALATLAVAELVRLVALNEDWLTGGPQGIGGIAG
LFPGLDGVARALATLALAALLLLGTALAARRLGQTQFGRVLRLMRENPDLATALGHDIVA
CKVKVLAIGGAMAGLAGGLYTLYLAFIGPDQLLPFETFLIWTMVVLGGLGNVAGAVVGAL
LVTALYAGIPFLKDVVALPSDLTGSLRVFAIGSIVLAVLMLKPQGLVPERLRRFHAQRP