Protein Info for MPMX19_04504 in Azospirillum sp. SherDot2

Annotation: Aliphatic amidase expression-regulating protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 415 TIGR01409: Tat (twin-arginine translocation) pathway signal sequence" amino acids 4 to 22 (19 residues), 20.5 bits, see alignment (E = 2.2e-08) PF13458: Peripla_BP_6" amino acids 40 to 365 (326 residues), 270 bits, see alignment E=7e-84 PF13433: Peripla_BP_5" amino acids 41 to 402 (362 residues), 475.3 bits, see alignment E=2.1e-146

Best Hits

KEGG orthology group: K01999, branched-chain amino acid transport system substrate-binding protein (inferred from 56% identity to bra:BRADO5874)

Predicted SEED Role

"Urea ABC transporter, urea binding protein" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (415 amino acids)

>MPMX19_04504 Aliphatic amidase expression-regulating protein (Azospirillum sp. SherDot2)
MTFTRRNFLKSTAVAGVAGSVGFPHIWIKDSGAAWAASGEIKVGVLFSLTGTTAVVEKSM
HNATLMAIDEINAAGGINGMKLTAVVEDPASDPATFADKANKLVLNDKCVSVFGSYTSAS
RKAVLPVFEKRKNLYWYPTLYEGRECSKNVMYTGAVPNQQQKDFIPWLVKTFGKKFYLIG
SNYIYPKEENNVCKILLKELGGEVVGEEYVPLGHSEFGSVLNKFRETKPDVIFSTVVGDS
VIALHKQYKAAGFSPDRMPMASLTTSEVEIAAMGGEYAAGHFTSAPYFMGHQSKENEVFV
ENYRKRFGKESVTHFVSEAAYFQMHLFRKAVEAIGKGDISPIAVRDATAGLEIMAPQGKV
KVDGDNLHCYLWPKIGQAQADGQFKVIQQSSDWVKPEPYWAYPGQSCTKDGLKGA