Protein Info for MPMX19_04488 in Azospirillum sp. SherDot2

Annotation: putative glutamine ABC transporter permease protein GlnM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 222 transmembrane" amino acids 20 to 45 (26 residues), see Phobius details amino acids 66 to 89 (24 residues), see Phobius details amino acids 91 to 104 (14 residues), see Phobius details amino acids 146 to 169 (24 residues), see Phobius details amino acids 189 to 216 (28 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 15 to 110 (96 residues), 95.3 bits, see alignment E=1.3e-31 PF00528: BPD_transp_1" amino acids 34 to 204 (171 residues), 77.2 bits, see alignment E=6.8e-26

Best Hits

Swiss-Prot: 33% identical to Y1079_HAEIN: Probable amino-acid ABC transporter permease protein HI_0179 (HI_1079) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: K02029, polar amino acid transport system permease protein (inferred from 69% identity to bja:bll3980)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (222 amino acids)

>MPMX19_04488 putative glutamine ABC transporter permease protein GlnM (Azospirillum sp. SherDot2)
MQTLNFQQLWRYQDQLIDGTLHTLLLTLVAAAIGTAIGVAAAAAVRSGPRPVRWAIRGYV
ELIRNTPSLIQLFVVFFVLPGFGLRMGAFEAASIALGLYFGAYCTEIVRAGLDAIPGSQV
EAGQCLGLTRWQVFRHIVLPPALRSVYPAFTSQFVLLLLGTSLASQISAEELFHTGGFIE
TRTYRSFEVYAVICGIYFALVMTFKLLFAAVGHLAFRWPVRR