Protein Info for MPMX19_04478 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 278 signal peptide" amino acids 1 to 38 (38 residues), see Phobius details PF08659: KR" amino acids 22 to 175 (154 residues), 39.1 bits, see alignment E=1.5e-13 PF00106: adh_short" amino acids 23 to 212 (190 residues), 144.8 bits, see alignment E=4.7e-46 PF01370: Epimerase" amino acids 23 to 151 (129 residues), 26.5 bits, see alignment E=8e-10 PF13561: adh_short_C2" amino acids 27 to 211 (185 residues), 95.7 bits, see alignment E=6.5e-31

Best Hits

KEGG orthology group: K07124, (no description) (inferred from 71% identity to pfl:PFL_2805)

Predicted SEED Role

"Oxidoreductase, short chain dehydrogenase/reductase family" in subsystem Ribitol, Xylitol, Arabitol, Mannitol and Sorbitol utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (278 amino acids)

>MPMX19_04478 hypothetical protein (Azospirillum sp. SherDot2)
MTTIMIIGFSRAESNPMATLPSVLVTGASTGIGAVYADRFARRGHDLVLVARNRKRMEAL
AARLRQETGVAVDIVEADLTQAGELAVVEARLRDDARIGILINNAGTAIGGSFIEQSTDV
VTQLLALNTTAMLRLCSAVAPRFAQAGEGAIVNVGSVVGLAPEFAMTVYGATKAFALFLS
QGLSIELGPKGVYVQAVLPAATRTEIWEHAGADVNSMTGVMEVDDLVDAALVGFDRRETV
TIPPLPDVEQWNTYQAARQAMLPNTRQDQAAARYRTAD