Protein Info for MPMX19_04417 in Azospirillum sp. SherDot2

Annotation: Dipeptide transport system permease protein DppC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 307 transmembrane" amino acids 39 to 60 (22 residues), see Phobius details amino acids 107 to 134 (28 residues), see Phobius details amino acids 148 to 180 (33 residues), see Phobius details amino acids 204 to 251 (48 residues), see Phobius details amino acids 272 to 294 (23 residues), see Phobius details PF12911: OppC_N" amino acids 25 to 76 (52 residues), 54.7 bits, see alignment 7.3e-19 PF00528: BPD_transp_1" amino acids 123 to 306 (184 residues), 104.2 bits, see alignment E=7.5e-34

Best Hits

Swiss-Prot: 68% identical to DPPC_ECO57: Dipeptide transport system permease protein DppC (dppC) from Escherichia coli O157:H7

KEGG orthology group: K12370, dipeptide transport system permease protein (inferred from 93% identity to azl:AZL_a03700)

MetaCyc: 68% identical to dipeptide ABC transporter membrane subunit DppC (Escherichia coli K-12 substr. MG1655)
ABC-8-RXN [EC: 7.4.2.9]

Predicted SEED Role

"Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.9

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (307 amino acids)

>MPMX19_04417 Dipeptide transport system permease protein DppC (Azospirillum sp. SherDot2)
MSAETSTNPKPAVPEPIAVSCPPHPLTEFWYHFKQNKGALGGLVVIALIALIAIFAGVIA
PHNPDIQYRDAILTPPVWQEGGSWSYILGTDDIGRDMMSRLMYGARLSMMIGLIVVTLSL
AVGLGLGLVAGFFGGMADVLIMRAMDILLALPSLLLAVVVAAILGPGLVNAMLAVSVVVI
PHYARLTRAAVLAEVNKDYVVASRVAGAGPLRLMLIVVLPNCVAPLIVQATLGFSTAILD
AAALGFLGLGAQPPTPEWGTMLASSLQFLQRAPWVVTWPGIAILVTVLAFNLLGDGLRDA
LDPKLKR