Protein Info for MPMX19_04360 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 383 transmembrane" amino acids 20 to 43 (24 residues), see Phobius details amino acids 63 to 69 (7 residues), see Phobius details amino acids 74 to 91 (18 residues), see Phobius details amino acids 98 to 115 (18 residues), see Phobius details amino acids 121 to 142 (22 residues), see Phobius details amino acids 150 to 170 (21 residues), see Phobius details amino acids 200 to 228 (29 residues), see Phobius details amino acids 249 to 273 (25 residues), see Phobius details amino acids 285 to 303 (19 residues), see Phobius details amino acids 309 to 328 (20 residues), see Phobius details amino acids 339 to 358 (20 residues), see Phobius details PF02653: BPD_transp_2" amino acids 65 to 351 (287 residues), 142.2 bits, see alignment E=8.7e-46

Best Hits

KEGG orthology group: K02057, simple sugar transport system permease protein (inferred from 98% identity to azl:AZL_a04190)

Predicted SEED Role

"Predicted nucleoside ABC transporter, permease 1 component" in subsystem D-ribose utilization or Deoxyribose and Deoxynucleoside Catabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (383 amino acids)

>MPMX19_04360 hypothetical protein (Azospirillum sp. SherDot2)
MLLSGSGKGQPGAVPGWVGYALLPVFNLVAAFVLSGLVILVIGENPVDVLSLLLSEALGY
PEAIGYTLYYTTDYIFTGLAVAIAFHCGLFNIGGEGQAYLGGLGAGLVALALTGWPWPVV
AVLAVLASALFGAAWAFIPAWLQAKRGSHIVITTIMFNFIAASIMTWLLVDVLIRPGSQS
PETREFDPGVWLPSMDRALGWFGIAIPASPLNLSFLWALACCVLFHIFLRRTRWGYELRT
VGRNERAAVYAGISPARNIVIAMLISGALAGFVGVNEILGVQHRVILNFTGGVGFVGIAV
ALMGRNHPVGIILAALLFGVLAQGGGQLSFEYPTINRELVMVIQGLVILFAGAMENLFKP
QVEALFRRRGGAAAADAATGGRG