Protein Info for MPMX19_04355 in Azospirillum sp. SherDot2

Annotation: Vitamin B12 import ATP-binding protein BtuD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 571 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 35 to 56 (22 residues), see Phobius details amino acids 58 to 59 (2 residues), see Phobius details amino acids 61 to 80 (20 residues), see Phobius details amino acids 85 to 105 (21 residues), see Phobius details amino acids 111 to 130 (20 residues), see Phobius details amino acids 148 to 152 (5 residues), see Phobius details amino acids 159 to 178 (20 residues), see Phobius details amino acids 208 to 227 (20 residues), see Phobius details amino acids 241 to 268 (28 residues), see Phobius details amino acids 280 to 301 (22 residues), see Phobius details PF02653: BPD_transp_2" amino acids 30 to 290 (261 residues), 111.1 bits, see alignment E=5.5e-36 PF00005: ABC_tran" amino acids 351 to 496 (146 residues), 88.6 bits, see alignment E=6e-29

Best Hits

KEGG orthology group: K01995, branched-chain amino acid transport system ATP-binding protein K01998, branched-chain amino acid transport system permease protein (inferred from 87% identity to azl:AZL_a04240)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (571 amino acids)

>MPMX19_04355 Vitamin B12 import ATP-binding protein BtuD (Azospirillum sp. SherDot2)
MGERRPAVILIAGALALLVYALAFASPYGLRVLTVAGVYALATFGFQIVFGLGGALSLAQ
GAFFGVGGYVTGILGSRYGLGFEATFPLSMLVPLLLALPVGLAVLRLESHYFALATLGIA
QVLHLLAVNLPELTGGSNGLAGVPAVVLFGWAVPRGLPMAGLVWGLVALGGLIGWRLARG
RLGRSLAMLRDDPLAVATLGLDVGRLRLIGFGISALFGGAAGALAVHTQRVVSPEVLEFP
VMVSILTIAIVGGRGRMAGAVLGAVLLLHLPEWFRFLERGYLVVYGVALLATVVLAPDGL
TGLLDRIAACLFGRKPRASVEAKEPPRPQNPVDGLAVDDLRKSFGGVRAVDGVSLELRPG
TITGLIGPNGSGKSTVINLLSGLERPDGGRVRLGGRDVTGLRADRLARAGLARSFQAAVL
PIGAGVLEAVAAARLAVDPDARTAEAHARWALDRLGVGDLAGQGCDGLPAALRRRVELAR
SLVRRPAVLLLDEPAAGLTDGEKAELATLLRELAQEGVAILLVEHDMGFLLPLAGRVLCL
DRGRVIYDGPAGGVRRDPAVAAAYLGRAVPA