Protein Info for MPMX19_04307 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 272 transmembrane" amino acids 37 to 58 (22 residues), see Phobius details amino acids 70 to 93 (24 residues), see Phobius details amino acids 114 to 139 (26 residues), see Phobius details amino acids 146 to 170 (25 residues), see Phobius details amino acids 180 to 201 (22 residues), see Phobius details amino acids 225 to 226 (2 residues), see Phobius details amino acids 237 to 257 (21 residues), see Phobius details TIGR03861: alcohol ABC transporter, permease protein" amino acids 12 to 262 (251 residues), 405.5 bits, see alignment E=5.1e-126 PF01061: ABC2_membrane" amino acids 13 to 231 (219 residues), 106.8 bits, see alignment E=1.8e-34 PF12698: ABC2_membrane_3" amino acids 61 to 253 (193 residues), 57 bits, see alignment E=2.8e-19 PF12679: ABC2_membrane_2" amino acids 71 to 197 (127 residues), 31.8 bits, see alignment E=1.4e-11

Best Hits

KEGG orthology group: K09686, antibiotic transport system permease protein (inferred from 93% identity to azl:AZL_a05190)

Predicted SEED Role

"ABC transporter permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (272 amino acids)

>MPMX19_04307 hypothetical protein (Azospirillum sp. SherDot2)
MTGRQLRTWGIAFQGIVAREVLRFIHQRERFLGALVRPLVWLFVFAAGFRAALGIAIIPP
YETYIPYEVYIVPGLIGMIQLFNGMQGSLSMVYDREMGSMRILLTSPLPRAFLLVARLLG
GVVVSILQVAAFLLIVRLYGIDLPAWAPLTVLPALLLNGLMLGALGMVLASTIRQLENFA
GVMNFVVFPLFFLSSALYPLYRMEEAGPLLWWLCSLNPFTHGVELIRFALFGRIDGMALA
VVAGSTLLFAALAVRGYSPARGMGSRAPSAAG