Protein Info for MPMX19_04255 in Azospirillum sp. SherDot2

Annotation: Lipopolysaccharide assembly protein B

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 677 PF14559: TPR_19" amino acids 35 to 97 (63 residues), 32.3 bits, see alignment E=6.9e-11 amino acids 174 to 236 (63 residues), 26.1 bits, see alignment E=5.7e-09 PF13432: TPR_16" amino acids 37 to 89 (53 residues), 25.7 bits, see alignment 8.6e-09 amino acids 98 to 160 (63 residues), 26.8 bits, see alignment E=3.8e-09 amino acids 167 to 228 (62 residues), 29.7 bits, see alignment E=5e-10 amino acids 200 to 244 (45 residues), 17.4 bits, see alignment 3.5e-06 amino acids 267 to 328 (62 residues), 21.9 bits, see alignment E=1.3e-07 amino acids 334 to 382 (49 residues), 17.8 bits, see alignment 2.6e-06 PF13176: TPR_7" amino acids 61 to 94 (34 residues), 15.1 bits, see alignment (E = 1.4e-05) PF07721: TPR_4" amino acids 95 to 117 (23 residues), 18.7 bits, see alignment (E = 1.3e-06) amino acids 163 to 185 (23 residues), 10.8 bits, see alignment (E = 0.00048) amino acids 196 to 220 (25 residues), 11.6 bits, see alignment (E = 0.00025) amino acids 329 to 350 (22 residues), 11.1 bits, see alignment (E = 0.00038) PF13181: TPR_8" amino acids 128 to 160 (33 residues), 15.1 bits, see alignment (E = 1.3e-05) amino acids 196 to 228 (33 residues), 13.9 bits, see alignment (E = 3.3e-05) amino acids 330 to 361 (32 residues), 15.5 bits, see alignment (E = 1.1e-05) PF13424: TPR_12" amino acids 129 to 190 (62 residues), 30.9 bits, see alignment E=1.6e-10 PF13374: TPR_10" amino acids 166 to 189 (24 residues), 15.5 bits, see alignment (E = 9.4e-06)

Best Hits

KEGG orthology group: None (inferred from 79% identity to azl:AZL_a05670)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (677 amino acids)

>MPMX19_04255 Lipopolysaccharide assembly protein B (Azospirillum sp. SherDot2)
MNNQRNSGQRNSGQRNSGNTAAASAAALVGQAVPLHQSGRLAEADALYRQALAAQPRQPD
ALHLLGMIACQTGRFTDAADLIGQAVAARRDVPDYHANLAYALQALGRSAEAERAARNAL
RLRRPFPEAANTLGNALNAQGKAEEAADAYRAALRARPDYAEAEGNLGTVLRSLGRSAEA
EPLLRHAVAANPSLLEAHAALGLALLDLGRSEEGETALRAVLARRPDHAPAALALAGSLQ
RRGADALPAHRRHLMLEPADAEGWNAHGLALQVADRIAPAGDAFTRALRLAPTMAEAMTN
LGTVRRLQGRIVESADLQRRALDLRPGYAAAHTNLALALQDLGDEAAAEREFTLALDADP
AQALARFNRSLLQLRQGRLAEGWEDYAVRFESGRLKPKHPLNIPEWDGGDLAGRRLLLWA
EQGLGDELMFGALLPEALARFPGTIVECEPRLVPLFQRSFPGTTVRGPTRRPADADCHLG
FGSLPRLLWPTAPLTPPPVGWLKPDPMRVAAWRSRLEALGPGLKIGIAWTSQRLTTERRQ
SYTELEDWAPLLRLPGLHAVSLQYDGREAEIAAIEQRLGVCVHRWPDLDQIADLEGTAAL
MANLDLVVTVASSAGEMAAALGTPVWRLGRRDWTQLGTAVRPWFPSMRCIQPDAGDNIKD
AIRKAVQLLTRHSAGDL