Protein Info for MPMX19_04239 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 318 signal peptide" amino acids 1 to 16 (16 residues), see Phobius details transmembrane" amino acids 25 to 47 (23 residues), see Phobius details amino acids 54 to 74 (21 residues), see Phobius details amino acids 80 to 100 (21 residues), see Phobius details amino acids 108 to 125 (18 residues), see Phobius details amino acids 155 to 175 (21 residues), see Phobius details amino acids 207 to 228 (22 residues), see Phobius details amino acids 234 to 253 (20 residues), see Phobius details amino acids 260 to 278 (19 residues), see Phobius details amino acids 284 to 305 (22 residues), see Phobius details PF02653: BPD_transp_2" amino acids 27 to 292 (266 residues), 101.7 bits, see alignment E=2e-33

Best Hits

KEGG orthology group: None (inferred from 71% identity to mag:amb2603)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (318 amino acids)

>MPMX19_04239 hypothetical protein (Azospirillum sp. SherDot2)
MNRLLLIAALAVAYVGVPLLFGGNAYVLGLIVAALTIAGVAVAWALLGNLGGMVSFGHAA
FFGVGSYTSAVLAMKLGVPVFASMLLGGVGAALSSIAMLPALRLRGPYFALAILAYAHIF
QILTTEMTPVTGGAGGLLSIPRFPKILGFDFGEKLGGYLIVLTIVVLAALAYDAIRRSTW
GLALKAMHDTEVATRVVGVPSTHLKAAMLVLSAFITGVVGAFNAHFISFLDPDYAFSSGW
TVLPIAAAIFGGYRTVWGPVVGALAIYLVDQLLFKPILPHGHQMILGVLLCAMILFSPGG
LMPALRRRPVKESRHAHA