Protein Info for MPMX19_04209 in Azospirillum sp. SherDot2

Annotation: Lipopolysaccharide assembly protein B

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2017 PF13432: TPR_16" amino acids 15 to 58 (44 residues), 19.8 bits, see alignment (E = 6.5e-07) amino acids 50 to 98 (49 residues), 21.6 bits, see alignment (E = 1.9e-07) amino acids 111 to 171 (61 residues), 33.5 bits, see alignment (E = 3.5e-11) amino acids 188 to 238 (51 residues), 19.4 bits, see alignment (E = 8.9e-07) amino acids 385 to 444 (60 residues), 17.7 bits, see alignment (E = 3e-06) amino acids 826 to 888 (63 residues), 19.2 bits, see alignment (E = 1e-06) amino acids 1027 to 1089 (63 residues), 26 bits, see alignment (E = 7.7e-09) amino acids 1062 to 1106 (45 residues), 23.4 bits, see alignment (E = 5.1e-08) amino acids 1519 to 1574 (56 residues), 17 bits, see alignment (E = 5.1e-06) amino acids 1547 to 1608 (62 residues), 20.2 bits, see alignment (E = 4.9e-07) amino acids 1582 to 1642 (61 residues), 22 bits, see alignment (E = 1.3e-07) amino acids 1619 to 1676 (58 residues), 24.1 bits, see alignment (E = 2.9e-08) PF13181: TPR_8" amino acids 106 to 137 (32 residues), 16.3 bits, see alignment (E = 6.2e-06) amino acids 1024 to 1054 (31 residues), 13.3 bits, see alignment (E = 5.6e-05) amino acids 1056 to 1089 (34 residues), 17.6 bits, see alignment (E = 2.3e-06) PF13176: TPR_7" amino acids 1578 to 1608 (31 residues), 19.3 bits, see alignment (E = 6.6e-07) PF13374: TPR_10" amino acids 1580 to 1605 (26 residues), 16.5 bits, see alignment (E = 5e-06)

Best Hits

KEGG orthology group: None (inferred from 76% identity to azl:AZL_a06500)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2017 amino acids)

>MPMX19_04209 Lipopolysaccharide assembly protein B (Azospirillum sp. SherDot2)
MTVAELLDAALPLHRAGRLAEALALYRRILTDDPAHADALHLSAIIAHQTGRTAEALANL
GAALAVQPGFATAYNSLGNVLADLGMLEEALSAYVVAIRQNDRYVEAYNNRATVLQRLGR
RNEAAEAYARALTMGPDNLTARFNYGVLQRELGQISPAANAFYAVVQADPSHSAAWRHLA
ICLRNLGHPDAEACLRRALQDAPGDKDLSLELGALLNSRGDHEAACGVLAAAVAAHPGIA
QLHFSYGTALQGTRRLREAVVQFRLALDREPAMQGACNNLGVALLELGEMGPATLVLSRA
VALSPGDAMVVNNHGTSLENRYDLEADSERPARWYRRALRLRPDYGKALVNLAGIHILRR
ELHHAERLYRRAAVADPRSVETFVNLGGLLLDRDDLSQAGRMYRRALAIDAGSPSALTGY
GLVLQRLGRIGEAEAAHRRALEIDGRHAEAAGNLGMMLWQCHQDDTAAEPWMDLALSVNP
SLNTAHLNRGMLRLSRGDLPGGWDGYRRRFWAKGYVNRRIAAPLWQGENSAGRRLLVWRE
QGVGDEIMFASCYPSLIGRAGHVVIECDRRLVPLFARSFPRATVRAESVDARGDETIQPP
DVDAHVPAGDLPGRLRASLSGFDGQAPWLVPDPALVKRWRERLAALGSGLRVGIGWRSQM
MTSERTPAYVMLDQWGPLFAVPGLTFVNLQYGECEAEIRAAEERFGVTIHRWADLNLKDD
FDGAAALTANLDLVISPAMSAGELAGALGLPVWRFGSRDWTQLGTEARPWFPTMRLFQPT
TGEALDGALARMAKELQRMASGRQQAQQAATIAPARPDPDDDRKMAEAVAHYRTGDFALA
ESVVRQLLDRVPAHSVALHLGGVLAKRRGSLEEAQDLLVRASAADPHNASAHAALCEVRQ
GLGQIEAADRASRACVAVQPDSAGHWVNRTALLRRTGQVAAARSAIIRALHLRPDLAPAL
GHLAELADTPGDAVRVHRIAVSLTPGTADVLSNLGGALHKLLRFDEAARLLDRATRCDPG
LAVAWTNRGNALEAMGLIAEAESCHRTAIELAPSLADAHGNLAYLLKRHGRQEEALAAFD
AALEADPKHAQARYNRSLLLLETGALRAGWADHDWRFATPQFQDQRRRLTMRAWRGENIA
GRRLLVWREQGVGDEILFASCYEEAMRRAGRLVIECDRRLVPLFARSFPGADVRPESADP
RDADLQIAAGSLPRLLRADLKRFPARSSWLVPDPALVARWRERLAGLGPGLGLGLRVGIG
WRSQLMTADRKAAYVMLDQWGPLFAVPGLTFVNLQYGECEAELRAAEERFGVTIHRWADL
NLKDDFDGAAALTANLDLVISPAMSAGELAGALGLPVWRFGGRDWTQLATGARPWFPTMR
LFQPSQGEGLEAAIARMANALRASATPSATPRGRAASPAGIGAGGGDSGTTDAADPDPDP
DRLLELAVAAHRSGAHDEATPLYERVLASRPRDPVALHLSGLLAHQSGASARGEGRIAAA
VAEAPEYATAHISLGNVRLALGMAGPAAASFRTALAVQPDSAAALTNLGNALDALERSAA
AAGLHRKAVAADPDLAEAHDNLGVALARLGRWAEAERAHAQALRRAPGLEAGWMNLSVAL
RRLGRLDAAERAGRRALALAPALADAMANRGRLLRELGDPAAAAPWCARALAVEPGHAAA
AFNGGLLELTAGRLAWGWDGYDRRFDTRDMAAAFRRPGAPLWGGGPLSGKRLLVWREQGI
GDELMFAQRLPELIAWADRDGGHVVVECDPRFVPLLARSFPRATVRPAPASPGEPSSDID
AHIPIGSLSRRLGGTLPDFATMGAAVGPALRADPAAVETWRRRLSGLGDGLRVGIAWRSS
QLDPDRMPDYTRIEDWRPLLTLPGLIPVNLQYGDCGAELAAARAGFGRAPHGFADLDLRN
DLDGTAALMSALDLVIAPATSTGELAGALGVPVWRLGRTGDWTALGTGVRPWFPLMRLFW
TGPGERVADLLPKVAAELERVRRAGGCLRNPDVKRPD