Protein Info for MPMX19_04195 in Azospirillum sp. SherDot2

Annotation: Sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 740 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 156 to 171 (16 residues), see Phobius details amino acids 235 to 250 (16 residues), see Phobius details amino acids 261 to 283 (23 residues), see Phobius details PF00512: HisKA" amino acids 338 to 403 (66 residues), 29.7 bits, see alignment E=8e-11 PF02518: HATPase_c" amino acids 448 to 560 (113 residues), 77.6 bits, see alignment E=1.5e-25 PF00072: Response_reg" amino acids 585 to 711 (127 residues), 47.5 bits, see alignment E=2.8e-16

Best Hits

KEGG orthology group: None (inferred from 79% identity to azl:AZL_a06630)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (740 amino acids)

>MPMX19_04195 Sensor histidine kinase RcsC (Azospirillum sp. SherDot2)
MLVAFLCALLALLGTASWAAVTALDYRDTLDRAEKDAREAAILFDSHARGVLDASVGLLE
QVAGRMDGRGLASWGQRTLPEAMAVERNGRVTLLSADGTALYGPTVAFAEPETSDGLSLL
VRPLSPEEEHRILPAFGHVAGQPAILFARRIHTAAGVFDGAILVAVPLAALDPVLKPFDA
SARSVGLYRPDGVRLAGAGAPSLGPLPRLEAGTIRVDAKWMVNGKPSILGLKRMAGLPIL
SAVTIPRTSVLDPWYVRMERGLIVVVAGVAALAGLSLLGAASLQREALARQALTEANAQL
EQANVQLEQRVEERTAALSALNVKLSRALEEKERANQAKGRFLSAANHDLRQPFQALRLF
HHILMERLANTRDHAIAEKMGEALDAGEKLLHALLEVATLDAGVVRPQLADVPVSAVFED
LLAEFRGMAAEKGLVLRAMPTRMVIRTDRTLLIRMLGDLVRNAIRFTDEGRVTIGCRHQG
SRQGRWLRIEVWDTGSGIPPEQLDNIFEDFVQLGNPERDRRQGLGLGLAKVRRKAALLGH
AVEVRSLQGRGSVFAVSVPVVGTERVSTAAPVQDVDPVVAGDRLILVVEDDPIQRDAVRL
LLESWDYRVVVADEGENALALIGGARLQADSPKTGSMADTPVPDLIVSDFRLPGRLTGVQ
MVAKVGERLGRPVPGLILTGDTAPERIREAVATGCRLLHKPVSPEELRGVIASILSERGL
SERNRPADGGEPAMENESAA